Query= MSMg01no443_g13.b1 MSMg01no443_g13.b1 CHROMAT_FILE:
MSMg01no443_g13.b1 PHD_FILE: MSMg01no443_g13.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:11:00 2005
(241 letters)
>mm_chr19_23974048_23974688
Length = 641
Score = 422 bits (218), Expect = e-122
Identities = 233/238 (97%)
Strand = Plus / Plus
Query: 1 ggatcatatgtgtggcatcactgtatggcatgttggctccttccgcaagttagggctcac 60
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 201 ggatcatatgtgtggcatcactgtatggcatgttggctccttccggaagttagggctcac 260
Query: 61 tatttagggtggggtgggtcactggcacactgagttaatatactttacctcagtgcttct 120
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 261 tatttagggtggggtgggtcactggcacactgagttaatatacttgacctcagtgcttct 320
Query: 121 cgctcaccttctctgctctgggttttccctttgctgtcttccaacaggcaaatcttcacc 180
|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 321 cgctcaccttctctgctctgggttttccctttgctgtcttccaacaggcaaatccacacc 380
Query: 181 atgccactcatcctggcccctcccttcagtttccctggttcccagcttctgcattagg 238
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 atgccactcatcctgggccctcccttcagtttccctggttcccagcttctgcattagg 438
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 241
Length of database: 641
Length adjustment: 9
Effective length of query: 232
Effective length of database: 632
Effective search space: 146624
Effective search space used: 146624
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
| Query= MSMg01no443_g13.g1 MSMg01no443_g13.g1 CHROMAT_FILE:
MSMg01no443_g13.g1 PHD_FILE: MSMg01no443_g13.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:11:00 2005
(491 letters)
>mm_chr19_24156341_24157230
Length = 890
Score = 758 bits (392), Expect = 0.0
Identities = 464/498 (93%), Gaps = 22/498 (4%)
Strand = Plus / Minus
Query: 1 tttcctccaggggcccagcctagaaagtggacagcatctctctgctctgctggtttaagc 60
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 839 tttcctccaggggctcagcctagaaagtggacagcatctctctgctctgctggtttaagc 780
Query: 61 tacagttctctatagcacacccagatctttctacatactgtggacgaaacaagaactaga 120
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 779 tacagttctctatagcacacccagatctttctacatactatggacgaaacaagaactaga 720
Query: 121 tagctagtcacttctatatatagtcagttct---tatatcagtataatcaactagcccac 177
|| ||||||||||| | |||||||| | |||||||||||||||||||||
Sbjct: 719 tatctagtcacttc-------aatcagttctgggga---cagtataatcaactagcccac 670
Query: 178 accaaaatctacactgatttggatccaatctgctgtctgcatttaccatgttcctggcca 237
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 669 accaaaatctacactgatttggatccaatctgctgtctgcatttaccatgttcctggcca 610
Query: 238 ttaactattttt---cacttggcctctctaccccagaaccccactgttctcctgtctaag 294
||||||| | |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 609 ttaacta----tagccacttggcctctctaccccagaaccccactgttctcctgtctaag 554
Query: 295 gagctgcccagcaagaaaaggaccccaaatcacagctggacctttaggagtcagatctgg 354
||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
Sbjct: 553 gagctgcccagcaagaaaaggaccccaaatcacagctggacctttagaagtcagatctag 494
Query: 355 tttcttggaca-ctaatgtgaaaatctgatttaagacccttaatctattcgtgcgtgttt 413
||| ||||||| || |||||||||||||||||||||||||||||||||| ||| ||||||
Sbjct: 493 ttttttggacacct-atgtgaaaatctgatttaagacccttaatctatttgtgtgtgttt 435
Query: 414 ttgcatgcttatgaggagggcatgcatatctgtggctaggggagcatccgtgcatgtgca 473
||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 434 ttgcatgtttatgaggagggcatgcatatctgtgggtaggggagcatccgtgcatgtgca 375
Query: 474 catatgggggccagagga 491
||||||||||||||||||
Sbjct: 374 catatgggggccagagga 357
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 491
Length of database: 890
Length adjustment: 10
Effective length of query: 481
Effective length of database: 880
Effective search space: 423280
Effective search space used: 423280
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
