BAC Information

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BAC

Clone NameMSMg01-443J10
Chromosome19 (Build37)
Map Location 27,632,936 - 27,633,080
singlet/doubletsinglet
Overlap genenone
Upstream geneSmarca2, Gm815, LOC100042576, Vldlr, LOC100042588, Kcnv2, D19Bwg1357e, LOC667868
Downstream geneLOC100042612, Rfx3, LOC666997, LOC433235, Glis3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-443J10.T7 (MSMg01no443_j10.b1)MSMg01-443J10.TJ (MSMg01no443_j10.g1)
ACCAG532959AG532960
length749745
length of high quality
(start - end)
194 (130 - 323)142 (122 - 263)
definitionCHROMAT_FILE: MSMg01no443_j10.b1 PHD_FILE: MSMg01no443_j10.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:11:14 2005CHROMAT_FILE: MSMg01no443_j10.g1 PHD_FILE: MSMg01no443_j10.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:11:14 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CCGACTCTCTATAATTGCGGCGCTAAANGAANTCACATATTTCGGACTCG
CGCGGATTCTCGAAAGTTACTTATTACTCTTAAAAAAAATTATCACATGG
GTTCATGCACATGAGTGTAGTACTTACAAATGCCAGAAGAGGGCGGCAGA
CCCCTTGAGCTGGAGTTACCCAAGGTGATTGCTGGGAACAGAACCCTGGT
CCTCTACCAGTGAACACTGTTAACCCTCTGCCATCTCTCCAGCTCCTTAG
TTTTGTTCATGGTACTTGCTATGGAAGATCTTGAGTTAGATCTGTTTCCT
CTCACCTTCTACCATTCATTTGTTTTCCTATTGACACACTGTTTTCAGTT
TGTCCACACTATGGTTATTCATACCTTGCTCCACATCACTAACTCCACTT
CACTGTGTCTCTAGTTCACTAAAGAGCATGGTGTTCTGAGTACCTGAACT
CTAACCAGGACCCAGATGTGGGTTCCTATCTGTAACCCTGATGATCATGG
ATGATGAGTTCATGCTAAGACCTCCTCGTCTTTCTCTGCTCTTTATCCCT
TTTTTTCCCCCCCTTATTGTCTTTGCCTCCCTGTCCTAATTTTCCCCCAC
TCCTATTTTTTTTATCTCTTTACCGCATCCCCCCCCCCCTTTTCTCCCCT
TCCCCCCTCTTTTTTTTTTTTTTTTTATTACACAAACCATTGCATTTTCC
CCTCCCCACTTGGCACTATATTCTTCTTTCCCTCTTTCTCCTCCCCCCC
TTTTTCGATGTATGGTAGGCCGGGGGCGGCTGGCTTCGAAATGGGTGAAC
TANAGAAGGTTACAGAAATCGGCGACTCNGTATTCGGAGCCCGTGGCAGA
ATGAGGAAGATTATACCCTAGCAACTGGAGACACTGAAGTTACTGGAGAA
AAAAAAAATTCTGAAACCAAAAAGGTGAAGTCAGGATAGATTCACGTAGG
GAAATCTCAGGGGGTGTGCATTTTTAGCATTCAGGATTAAAAATTATAAG
TGACTTTCCAATAATTGTCTTTTAAAGCATATATGAGAAGACTATCAACA
TATTTAAGATGATTTTTTTTTATGGAACCTAAGGGAATTTAAAAATCTTT
TTTTGTTAGAGTACTATGCGAGAAGACAGATAGTATACCGTTACTAATTC
TGATCCTTCAGTTCCCCCTTTTCTTCTTTTTTCCCCTCCAAGCCTTCCCT
TTATTTCCCAAACCCCCTATAATTCCTCATGCCCTGCTCTCTACACTCTT
TGTCTCCTCCCCCCAACTTATTTTTCTCCGTGCCCTTTTCCATCCCGGCC
CCGTCCCCTCCTTAATTTATTTCCTTCCCCCCCCTTTTTTTCTTCTTTTC
CGCGCACCCCCACCTCCCCCCTTCTTTCTTCCCACCTTCTTTATTCGCCC
GTCTTTTTTTATCAATTCTCCCATTTCCTTCCCCCCTTTCACGCCACTCT
TATCTCTTTTTTATTCCCCCCTTTTTCCCGCCTTAATTATTTAAN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no443_j10.g1 MSMg01no443_j10.g1 CHROMAT_FILE:
MSMg01no443_j10.g1 PHD_FILE: MSMg01no443_j10.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:11:14 2005
         (142 letters)



>mm_chr19_27632736_27633280
          Length = 545

 Score =  242 bits (125), Expect = 8e-69
 Identities = 139/145 (95%), Gaps = 3/145 (2%)
 Strand = Plus / Plus

                                                                       
Query: 1   caactggagacactgaagttactggag---aaaaaaaaaattctgaaaccaaaaaggtga 57
           |||||||||||||||||||||||||||   ||||||||||||||||||||||| ||||||
Sbjct: 201 caactggagacactgaagttactggagaaaaaaaaaaaaattctgaaaccaaagaggtga 260

                                                                       
Query: 58  agtcaggatagattcacgtagggaaatctcagggggtgtgcatttttagcattcaggatt 117
           ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 261 agtcaggatagattcacgtagggaaatctcagggggtgtgcatttttagtattcaggatt 320

                                    
Query: 118 aaaaattataagtgactttccaata 142
           |||||||| ||||||||||||||||
Sbjct: 321 aaaaattagaagtgactttccaata 345


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 9
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 142
Length of database: 545
Length adjustment: 8
Effective length of query: 134
Effective length of database: 537
Effective search space:    71958
Effective search space used:    71958
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)