Query= MSMg01no445_c03.b1 MSMg01no445_c03.b1 CHROMAT_FILE:
MSMg01no445_c03.b1 PHD_FILE: MSMg01no445_c03.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:13:14 2005
(563 letters)
>mm_chr19_19605923_19606885
Length = 963
Score = 990 bits (512), Expect = 0.0
Identities = 533/540 (98%), Gaps = 1/540 (0%)
Strand = Plus / Minus
Query: 1 agacttagaggcctttattgtgatcccttgccagaacagccatgctgctggatttaaatt 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 539 agacttagaggcctttattgtgatcccttgccagaacagccatgctgctggatttaaatt 480
Query: 61 cttcttcacattccctcattagattacccatgttccaaacttcacacccatacatcatta 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 479 cttcttcacattccctcattagattacccatgttccaaacttcacacccatacatcatta 420
Query: 121 agtagacatagaaggtaataaaaaatgaagacataaaattggaaaggttgctcaaagggg 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 419 agtagacatagaaggtaataaaaaatgaagacataaaattggaaaggttgctcaaagggg 360
Query: 181 ggatggaagaagttagaggtactaaataaagatggatctgtcactcttaagtatgcacat 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 359 ggatggaagaagttagaggtactaaataaagatggatctgtcactcttaagtatgcacat 300
Query: 241 acatgacatttttttgagcagaaattattattttagccctttccccaactcctccattgg 300
||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 299 acatgacatttttaagagcagaaattattattttagccctttccccaactcctccattgg 240
Query: 301 aggtctcatgctcagtacaattgttggctgcaagcatctgtatctgtattggtcaagcaa 360
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 239 aggtctcatgctcagtacaatggttggctgcaagcatctgtatctgtattggtcaagcaa 180
Query: 361 tacaggttggcagagtctctcaggagacagctataccaggcttctgttagcaagcacttc 420
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 179 tacaggttggcagagtttctcaggagacagctataccaggcttctgttagcaagcacttc 120
Query: 421 ttggcatcagcaatagtgtctgggtttggtggctgcagatgggatggatccccaggtggg 480
||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 119 ttggcatcagcaatattgtctgggtttggtggctgcagatgg-atggatccccaggtggg 61
Query: 481 gcagtctctagatgccctttccttcagcttctgttccactctttgtcactttatttcctt 540
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 60 gcagtctctagatgccctttccttcagtttctgttccactctttgtcactttatttcctt 1
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 563
Length of database: 963
Length adjustment: 10
Effective length of query: 553
Effective length of database: 953
Effective search space: 527009
Effective search space used: 527009
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no445_c03.g1 MSMg01no445_c03.g1 CHROMAT_FILE:
MSMg01no445_c03.g1 PHD_FILE: MSMg01no445_c03.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:13:14 2005
(508 letters)
>mm_chr19_19437208_19438115
Length = 908
Score = 975 bits (504), Expect = 0.0
Identities = 507/508 (99%)
Strand = Plus / Plus
Query: 1 ataattaattgttttttgaatatagtaataataaaaaaacacctaaatttgaatttttca 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ataattaattgttttttgaatatagtaataataaaaaaacacctaaatttgaatttttca 260
Query: 61 aaaaagaaaaagctttgttcttaatctactatgtttacagaactgaacttacaaaacctt 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 aaaaagaaaaagctttgttcttaatctactatgtttacagaactgaacttacaaaacctt 320
Query: 121 ggcaaactggatatggtcacagaaactacagggtttccataaatgtctttggctactggc 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ggcaaactggatatggtcacagaaactacagggtttccataaatgtctttggctactggc 380
Query: 181 cacatgagtaggtaccctgtagttttcctgaaatactacctcatattttgagtggcatcc 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 cacatgagtaggtaccctgtagttttcctgaaatactacctcatattttgagtggcatcc 440
Query: 241 tctgcttgaattccgtctacagcctacacgtattccagctttggtaggaacagccacctg 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tctgcttgaattccgtctacagcctacacgtattccagctttggtaggaacagccacctg 500
Query: 301 ttttattctcctctaaatatattttaaaaatcctttttatatacttcaataaaacaagaa 360
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 501 ttttattctcctctaaatatattttaaaaatcctttttatatacctcaataaaacaagaa 560
Query: 361 atttagccaaccaagtttgtgataataatcaaaagacaaagtatgctaaggttggggtga 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 atttagccaaccaagtttgtgataataatcaaaagacaaagtatgctaaggttggggtga 620
Query: 421 gagtctggattttatttttatctacttgtgcagcatttgggaggtgtagtgcaagtgtga 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 gagtctggattttatttttatctacttgtgcagcatttgggaggtgtagtgcaagtgtga 680
Query: 481 ttcctacatgtgaactgtgaatagggtt 508
||||||||||||||||||||||||||||
Sbjct: 681 ttcctacatgtgaactgtgaatagggtt 708
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 508
Length of database: 908
Length adjustment: 10
Effective length of query: 498
Effective length of database: 898
Effective search space: 447204
Effective search space used: 447204
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
