Query= MSMg01no447_h21.b1 MSMg01no447_h21.b1 CHROMAT_FILE:
MSMg01no447_h21.b1 PHD_FILE: MSMg01no447_h21.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:16:24 2005
(453 letters)
>mm_chr19_19581342_19582198
Length = 857
Score = 847 bits (438), Expect = 0.0
Identities = 449/454 (98%), Gaps = 4/454 (0%)
Strand = Plus / Minus
Query: 4 ggaattcttgcttttgttccttatcttacaataatatgcagagatctttggctgacataa 63
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 657 ggaattcttgcttttgttccttatcttacaataatatgcagagatctttggctgacataa 598
Query: 64 ttgtaatcatgtcattccataattaaaatagtctataatttttcaggatatgtcttgggt 123
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 597 ttgtaatcatgtcattccataattaaaatagtctataatttttcaggatatgtcttgggt 538
Query: 124 aacagtctttttaacttggcacacagtgttatttgatcctagccttaattcttttttcat 183
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 537 aacagtctttttatcttggcacacagtgttatttgatcctagccttaattcttttttcat 478
Query: 184 gtttgtataatctacatcagtagctgtgatcttgctccttctgtattgggcctgtactct 243
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 477 gtttgtataatctacatcagtagctgtgatcttgctccttctgtattgggcctgtactct 418
Query: 244 actgcctccattaactttggattccttcaattgtagttctccaagaaatgcttagatcag 303
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 417 actgcctccattaactttggattccttcaattgtagttctccaagaaatgcttagatcag 358
Query: 304 tcatgcagatttctcctcactcaatgctgaagataacccaattgctttagcaacaaccat 363
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 357 tcatgcagatttctcctcactcaatgctgaagataacccaattgctttagcaacaaccat 298
Query: 364 ttcctaccatgaaattctcaacctctctct-t---tctctctctgacttctagcctataa 419
|||||||||||||||||||||||||||||| | |||||||||||||||||||||||||
Sbjct: 297 ttcctaccatgaaattctcaacctctctctctctctctctctctgacttctagcctataa 238
Query: 420 ctatataaaatgagtttcatctctctttacttcc 453
||||||||||||||||||||||||||||||||||
Sbjct: 237 ctatataaaatgagtttcatctctctttacttcc 204
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 453
Length of database: 857
Length adjustment: 10
Effective length of query: 443
Effective length of database: 847
Effective search space: 375221
Effective search space used: 375221
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no447_h21.g1 MSMg01no447_h21.g1 CHROMAT_FILE:
MSMg01no447_h21.g1 PHD_FILE: MSMg01no447_h21.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:16:25 2005
(390 letters)
>mm_chr19_19385942_19386737
Length = 796
Score = 673 bits (348), Expect = 0.0
Identities = 379/392 (96%), Gaps = 6/392 (1%)
Strand = Plus / Plus
Query: 5 catgtaaatttataatcttacattggaaaaaattaaaatcatgggctggagaagtttgat 64
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 205 catgtaaatttataatcttacattggaaaaaattaaaatcatgggctggaaaagtttgat 264
Query: 65 actttgtatcatgtacctgttagccttgctctctcatctatactatgagtatttcaaatc 124
|||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 265 actttgtatcatgtacttgttagtcttgctctctcatctatactatgagtatttcaaatc 324
Query: 125 tctgcttggtccttcagattcattctgcaattctgtagagagctacacaaagaacactaa 184
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 325 tctgcttggtccttcagattcattctgcaattctgtagagagatacacaaagaacactaa 384
Query: 185 gctttgtaatcttttggaaagaaacctccaatgtttcttcgtgtcaactattcttt---a 241
||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
Sbjct: 385 gctttgtaatcttttggaaagaaaccttcaatgtttcttcgtgtcaactattctttttta 444
Query: 242 tatccttccttaagaaagaaacattcattat---atttcaaggttaatgccttctataag 298
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 445 tatccttccttaagaaagaaacattcattatcatatttcaaggttaatgccttctataag 504
Query: 299 acaaaatcgttgactcttcaagatgtttggctttataaggaaaagttcaaggcatattgt 358
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 acaaactcgttgactcttcaagatgtttggctttataaggaaaagttcaaggcatattgt 564
Query: 359 gaatgtctacctctgggttattcctctcatca 390
|||||||||||||||| |||||||||||||||
Sbjct: 565 gaatgtctacctctggtttattcctctcatca 596
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 390
Length of database: 796
Length adjustment: 9
Effective length of query: 381
Effective length of database: 787
Effective search space: 299847
Effective search space used: 299847
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
