NNNAATAATCTATAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXCGCGGAATTCACGACTTGTCCTGAGCCCAGAACCTTTCTCTTTTTTTT
TTGGTTCTAATTGTTCCTAGTCCTAGACCTGGAAGCTTCCAGCCTCTGTA
TAAGCTAATCTTCCAAACTGACTGATTCAATCCAGCTTTTCTCAGGTTCT
GGCTGCATTGCTCTGCTTGGCCTCATACTAACATTAGCAATCAGTTCTAA
TCTTCTGGCTCCTTCATTTTCTCTGGCTCGTTCTGCCTTCATCTGTGTCT
AGGTTCTTCTTTCTGAAACCTGCCTCTATAAAACTGTTCTAAACACACAT
CCTACATCACCCCTGTCTCTCTGTGAGACCCCAACTTAAAGCGTTTCTCC
CTGAAAGGTAAAGCCCCTAAAATATTCCCCCCAGCTTGTTTTCCCTGATC
TCTAAATATACAGCCAGAAAGAAGCTTCTTTGTTCCCTAAAGGCCGCAAA
AAGCCCTTTTTGTTTCTAAACCTTAAAACCAGAAATGGGAAAATTTGTAA
AAAAAACCTAACCAGGGGGTTGGTTTGGGTCCCCGGGGCCCCGAAAACCA
AAAATAATTCCCCAAAAAGAAAAGAAAATTCCCCCCCAAAAACCCCTGGG
GGGGAAATTTTACCAAAAACCCTCCAAAAAAAAAATTGAAAAAATTCCCC
CCATTTTTTAAATATCTTTTAAAATTCCCCCAAACCCCAAAATATTCTTT
TTTTTTTTTAAAAGCCCCTAAAATTATACCTGGGGGAAN

TAATTACTCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAATAATATGTGTCAGTGT
TCTGAGAAATGGAAATGAGTATCTTCAAAGGGACATGTGTTTTCAGTACA
AAAGCCGTTGACAGCATGCACTGGCAAAATCCTGTGCCAGGAGAGGCACC
ATCCTCCACAGGGCTAAGCTCAGAACACACAGAGAGAAAGACCAGGATAG
GCTGGCCGTTGTTCAAAGATTTCCCCAGACTGACTCAGATGTAAGAGAGT
GTCTGGTGATCACAGAGTAAGGGAACATTCCCTGCTTGCAGCACACTTAT
ATCTAGTATGTTTTTAACAGGAGAAGGAAAAGAGTTGGAGAAAAAAAACA
AATGAACAACAGTTCCTGATAGTGTGTGCATTTGATTGACTCCTTCATTT
TGCTATGCACTTTTACTTGGAGGCATTGGTTAGGTTTTCTGTAAGCTATA
GCAAGAAGGGGGAAGAAGGTTCCAGTGCTCCTGGCTACAGGGCTCTCAGG
GTGTGGTTGTGTTTCTGTACGCTTCTAAGTATCATCTCTATCAAACCAAC
TTCCGAAACAATTGCAGTTGTGCATTCTTGGGTGTAAAATCTGAAACCTT
TCTTGAAAAGGGCGTTTTAAATTGTAAAAAAATCCTATATAACTGTAGGG
GGCCTCTCTCTTGGTTAATAAATATCGAAATTTTCCCTTTTTCCTC

Query= MSMg01no447_n18.g1 MSMg01no447_n18.g1 CHROMAT_FILE:
MSMg01no447_n18.g1 PHD_FILE: MSMg01no447_n18.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:16:54 2005
         (427 letters)



>mm_chr19_50087984_50088810
          Length = 827

 Score =  781 bits (404), Expect = 0.0
 Identities = 424/436 (97%), Gaps = 9/436 (2%)
 Strand = Plus / Minus

                                                                       
Query: 1   aataatatgtgtcagtgttctgagaaatggaaatgagtatcttcaaagggacatgtgttt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 520 aataatatgtgtcagtgttctgagaaatggaaatgagtatcttcaaagggacatgtgttt 461

                                                                       
Query: 61  tcagtacaaaagccgttgacagcatgcactggcaaaatcctgtgccaggagaggcaccat 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 460 tcagtacaaaagccgttgacagcatgcactggcaaaatcctgtgccaggagaggcaccat 401

                                                                       
Query: 121 cctccacagggctaagctcagaacacacagagagaaagaccaggataggctggccgttgt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 400 cctccacagggctaagctcagaacacacagagagaaagaccaggataggctggccgttgt 341

                                                                       
Query: 181 tcaaagatttccccagactgactcagatgtaagagagtgtctggtgatcacagagtaagg 240
           |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 340 tcaaagatttccccagactgactcagatataagagagtgtctggtgatcacagagtaagg 281

                                                                       
Query: 241 gaacattccctgcttgcagcacacttatatctagtatgtttttaacaggagaaggaaaag 300
           ||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 280 gaaaattccctgcttgcagcacacttatatctagtatgtttttaccaggagaaggaaaag 221

                                                                       
Query: 301 agttggag---------aaaaaaaacaaatgaacaacagttcctgatagtgtgtgcattt 351
           ||||||||         |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 220 agttggagaaaaaaaacaaaaaaaacaaatgaacaacagttcctgatagtgtgtgcattt 161

                                                                       
Query: 352 gattgactccttcattttgctatgcacttttacttggaggcattggttaggttttctgta 411
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 160 gattgactccttcattttgctatgcacttttacttggaggcattggttaggttttctgta 101

                           
Query: 412 agctatagcaagaagg 427
           ||||||||||||||||
Sbjct: 100 agctatagcaagaagg 85


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 427
Length of database: 827
Length adjustment: 9
Effective length of query: 418
Effective length of database: 818
Effective search space:   341924
Effective search space used:   341924
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)