BAC Information

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BAC

Clone NameMSMg01-448G06
Chromosome19 (Build37)
Map Location 22,113,562 - 22,113,950
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100042294, LOC100041602, LOC100041613, Zfand5, Gda, LOC100041633, 1110059E24Rik, 5730446C15Rik, Tmem2, EG433229
Downstream geneTrpm3, EG433230
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-448G06.T7 (MSMg01no448_g06.b1)MSMg01-448G06.TJ (MSMg01no448_g06.g1)
ACCAG536616AG536617
length827767
length of high quality
(start - end)
---382 (82 - 463)
definitionCHROMAT_FILE: MSMg01no448_g06.b1 PHD_FILE: MSMg01no448_g06.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:17:39 2005CHROMAT_FILE: MSMg01no448_g06.g1 PHD_FILE: MSMg01no448_g06.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:17:39 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
AACACCGTTTTGCCCTTCGATCTCTATAGTTTCCGCATCCGCGGAATTCC
TTTCTGATTTTCCCGAGATCTTTAAAGATTCTTCTCATTGTTTAATAACC
TATCTACTCACCTTTCTTCACATAACCTACGATGCAAATCTTACCGCATA
TATTAGAAAACACAATTTTGCAAGGCATCCTGTACATCGAATACTTATCA
GCCTCTACCCAATGATAGCCCCTTTATAGTATGTTCTTCTCCCTCTGTTT
GCCGGCTATATTGCTCTTTATATATCCTTACATACGATGCATCTATTTAT
TGCATGCCTATGATTACTCTGTTATTGTCCTCTCACTATTATAACATGTC
ATCAGATCCCATTATATATGGCCGTGAGCCACTATGCGCCTTGCAGCTTA
TTGAATTCACCTATCTCTGTATTTATTAATCCTTTGCCTTCCAATTTGGA
GACGAACTCACCCCCTGGCCCTTTTTTCCACCACCGCCCCTTTTACTTTT
TTACTATCCGTATTTCTGCCGAATTCTTCCTCACACATCCCATCCGCCTT
TTTTTCCCCATTTCCCCCCTTTCTTTCTTTTACTCCCGCCTTTTCCCCCT
CCTTTTTACTCTTTACCCACCTTACCCCCCTCCCCCCCCCTTTATTTCCA
TTTACCCCCCCTTTTTTACCAATTTGTTAGCCTCCGCTCCCACCTTATTA
TCCCCACTAACCCATATTCTATCCTTCCCCCACACCCCTTTTTTACCCTT
TTTTTTCCCCCCATTCTTTTTTCTTCCCCTCACCTCCACATCTTTCCCCA
ATTCTTTTTATTCCCTCTCCCACCCCA
NNNNNCCGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCACCCTTGGAATTGTGAAA
CTAAGGTCACCGGTTTTCCTGTAGTCAGTCAGTGATCACTCTCAAGGGCC
ACCCACAGATCCTCACCATGTGGTACTGTCACACCACAGAGGCTTGCCCT
TTCTCACAGACAACAGGACAATCTACCTACACTACTCACAGAGTCTTATC
TAACATACTTAGTTCTGTCTATGACCATATATCATCTGGGCCGCAGTCTT
AAAATTAAAAAAACAAACGAACATACAAACGAACAAACAAACAAAAAAAC
AAGACAAAAATAGTGGTTTGCCAGCATCCGAAGGAATGAGATTGTCCAGT
GAGTATGTGTTGTAACACAATGCCCCTTCACGCCAGCAAATGCTAAGAGA
TACCACACATTTCTATTCAGCAGTTGTTTACTTCTGAGATGCTTTTATGA
GCTTTGCTCCACTTATTTCTTTAACTTTCCGACCACAAACACCCCGCCTA
TGGTCTATCCTATGTCCCAGTGTATTTTGTCTAACACCACCCGCCCTCCC
CCCTTTGTTATCTCTTTCATAAAAATCTTCAGTTGGTTTTTTAAATTGGT
TACTCTTTTCTTTTCTTATTTCTCTTACCTACGGCCAATTTTACTCTTTT
TCCTTTTAACCAAGCCCCTTCTCATTATTCTCTATTATCCCTTTATCACC
GCAATTTATCTCNTCTA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no448_g06.g1 MSMg01no448_g06.g1 CHROMAT_FILE:
MSMg01no448_g06.g1 PHD_FILE: MSMg01no448_g06.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:17:39 2005
         (382 letters)



>mm_chr19_22113528_22114307
          Length = 780

 Score =  640 bits (331), Expect = 0.0
 Identities = 372/391 (95%), Gaps = 11/391 (2%)
 Strand = Plus / Minus

                                                                       
Query: 1   cacccttggaattgtgaaactaaggtcaccggttttcctgtagtcagtcagtgatcactc 60
           |||| |||| |||||| |||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 423 caccgttgggattgtggaactaaggtcaccggttttcttgtagtcagtcagtgatcactc 364

                                                                       
Query: 61  tcaagggccacccacagatcctcaccatgtggtactgtcacaccacagaggcttgccctt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 363 tcaagggccacccacagatcctcaccatgtggtactgtcacaccacagaggcttgccctt 304

                                                                       
Query: 121 tctcacagacaacaggacaatctacctacactactcacagagtcttatctaacatactta 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 303 tctcacagacaacaggacaatctacctacactactcacagagtcttatctaacatactta 244

                                                                       
Query: 181 gttctgtctatgaccatatatcatctgggccgcagtcttaaaatt--aaaaaaacaaacg 238
           |||||||||||||||  ||||||||||||||||||||||||||||  |||||||||||| 
Sbjct: 243 gttctgtctatgacc--atatcatctgggccgcagtcttaaaattaaaaaaaaacaaaca 186

                                                                       
Query: 239 aacatacaaacgaacaaacaaacaaaaaaacaagacaaaaatagtggtttgccagcatcc 298
           |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 185 aacagacaaacgaacaaacaaacaaaaaaacaagacaaaaatagtggtttgccagcattc 126

                                                                       
Query: 299 gaaggaatgagattgtccagtgagtatgtgttgtaacacaatgccccttcacgccagcaa 358
            |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 125 aaaggaatgagattgtccagtgagtatgtgttgtaacacaatgccccttcacgccagcaa 66

                                          
Query: 359 atgctaagaga-------taccacacatttc 382
           |||||||||||       |||||||||||||
Sbjct: 65  atgctaagagatgaactgtaccacacatttc 35


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 382
Length of database: 780
Length adjustment: 9
Effective length of query: 373
Effective length of database: 771
Effective search space:   287583
Effective search space used:   287583
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)