BAC Information

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BAC

Clone NameMSMg01-448K16
Chromosome19 (Build37)
Map Location 11,585,774 - 11,586,241
singlet/doubletsinglet
Overlap geneEG666926
Upstream gene0610038F07Rik, 5730453I16Rik, 2810441K11Rik, Tmem138, Cybasc3, Dak, Ddb1, Vwce, Pga5, 2210404E10Rik, Vps37c, Cd5, Cd6, Slc15a3, Tmem132a, Tmem109, Prpf19, Zp1, Gpr44, Ccdc86, Ms4a10, E530011F12Rik, 5033428B15Rik, AW112010, Ms4a8a, Gm336, LOC624395, 1700025F22Rik, Ms4a13, Ms4a12, Ms4a1, Ms4a5, Gm1276, Ms4a7, Ms4a4a, LOC435588, Ms4a4c, LOC433221, Ms4a4b, Ms4a6c
Downstream geneMs4a6b, Ms4a4d, LOC100040454, Ms4a6d, Ms4a2, Ms4a3, Plac1l, Oosp1, Gm97, Gif, EG666958, Mrpl16, Stx3, Olfr1417, Olfr1418, Olfr1419, EG622845, EG666985, Olfr1420, AV312086, Osbp, GA_x5J8B7W6KF8-6942124-6941700, Olfr1422-ps1, Olfr1423, Olfr1424, Olfr1425, Olfr1426, Olfr1427, Olfr1428, Olfr76, Olfr1555-ps1, Olfr1430-ps1, Olfr1431, Olfr1429-ps1, Olfr262, Olfr232, Olfr1433, Olfr1435-ps1, Olfr1436, Olfr1437, Olfr1438-ps1, Olfr1439-ps1, Olfr1440, Olfr1441, Pfpl, Mpeg1, Dtx4
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-448K16.T7 (MSMg01no448_k16.b1)MSMg01-448K16.TJ (MSMg01no448_k16.g1)
ACCAG536825AG536826
length776801
length of high quality
(start - end)		475 (47 - 521)241 (79 - 319)
definitionCHROMAT_FILE: MSMg01no448_k16.b1 PHD_FILE: MSMg01no448_k16.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:18:01 2005CHROMAT_FILE: MSMg01no448_k16.g1 PHD_FILE: MSMg01no448_k16.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:18:01 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTTCGAGAATCCGCG
GAATTCCACTGTCTTTCTCTGTGACACTTTGGTTCAAGGAAGCCATTCAC
ACAGAAAACTAATGCTCTAAGATGCAGCTGCAGACACCAGCTACTCTACT
CAATCTCTGCCACAGAATGAGTGTCCTAGGTCTGCAACACCTGATGACCC
ATGAAGTGACTCAGAAACAACACAGTTTGGTGTGTGATTCAACTCTGTAG
CAACACTATAGAAACTAGTAAAAGTGACACTATGGGGTAAGAAAATGGAA
GCACTGACTATACTGGGTGACTCTATGACATTTTGATTCATTTCACAGGT
TCTTTTGGTGCTAACACCAAATCCTGCTGTGACAGTGATGGCATCTCCCC
GCCCCCCCCCCTCCTCCGACACTTCAACCATTGCTACCTTCAGAACACCA
AGGGAAAAATGTTCCAGGAAATGTATACAAGAACCACCCAGGAGAAAGGC
TCTACCTGTGTGTGTGTGTGTGTGTGCGCATTTTTCCCTTCTCCTTTTTT
CATTTACCCCCCCTTTACTCCTTTTACTCTTTTCCCATACCCTCTCCCCC
GCATTTTCCGTTTCCCCCCCTATTTCTCCATCCTTTGTCTCCCCTCGCCG
TTTATTTTGTTATTACCCCTGTCTTCCCTTCCCAAATCGCATTTTTTATT
TCATTTTTCCCCACTTTTTTTTTTATCCCTACCCGCAATATTCCCCATAC
TATTTGTTATTTCTTTACCCCCCCTG

NCCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXTTTGTTTAGCTCTGTACCCCAT
TTTTAATAGGGTTATTTGGTTCTCTGGAGTCTAACTTCTTGAGTTCTTTG
TATATATCGGATATTAGCCCTCTACTGGATGTAGGGTTGGTAAAGATATT
TTCCCAATACGTTGGTTGCTGTTTTGTTTTATTGACAGTGTCCTTTACCT
TATATAAGCTTTGTAGTTTTATGAGGTCCCATATGTTTATACTTGATCTT
AGAGCATAAGCTATTTGTGTTTTTTTTTTGAAAATTTCCCCTGTGTCCAT
GTGCTTGAGGCTCTTCTCCACTTTCTTTTCTATTAGGTTCAGTGGATCTG
GTTTGAGGACCTTGCACCCCTTATACTTGAGCTTTTTACAAGGAGGAGAC
AATGTATTCATTTGCTCTCTTCTTATTTGTTTACCCCCTGTTTTATTCTT
CCCCTCTTCCGGCCCCGCTTGTCTTTTTTCCCTTGTTTGGTTTTTATCTC
TCTGGCGTTCATCTCCACTCCCTTTTTTTGTTGTCTTTCACACTGCGGCG
TTTTTCTTATTCTCTTTCCTATCCCCCGTTCCTTTTTCTACCTGTACCAT
CGTTGCCTTTTCTTCTGTTTTTCATCTTAGCCATTCCTGTGCATGTCTCA
TTTCCGCCTTATCTTTCCCTATTTTCTCTCATTTTTCGTATTTGCGGCCT
CTATCGGATTATTGTCTCTAGTCTGTTGTTTTTCCTTCTCTCTTTTTTAA
C
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no448_k16.b1 MSMg01no448_k16.b1 CHROMAT_FILE:
MSMg01no448_k16.b1 PHD_FILE: MSMg01no448_k16.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:18:01 2005
         (475 letters)



>mm_chr19_11585570_11586441
          Length = 872

 Score =  818 bits (423), Expect = 0.0
 Identities = 458/471 (97%), Gaps = 3/471 (0%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattccactgtctttctctgtgacactttggttcaaggaagccattcacacagaaaact 64
           ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattccactgtcgttctctgtgacactttggttcaaggaagccattcacacagaaaact 264

                                                                       
Query: 65  aatgctctaagatgcagctgcagacaccagctactctactcaatctctgccacagaatga 124
           ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 265 aatgctctaagatgcagctgcagacaccagctactctactcaatctctgtcacagaatga 324

                                                                       
Query: 125 gtgtcctaggtctgcaacacctgatgacccatgaagtgactcagaaacaacacagtttgg 184
           ||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||
Sbjct: 325 gtgtcctaggtctgcaacacctgatgatccatgaagtggctcagaaacaacacagtttgg 384

                                                                       
Query: 185 tgtgtgattcaactctgtagcaacactatagaaactagtaaaagtgacactatggggtaa 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 tgtgtgattcaactctgtagcaacactatagaaactagtaaaagtgacactatggggtaa 444

                                                                       
Query: 245 gaaaatggaagcactgactatactgggtgactctatgacattttgattcatttcacaggt 304
           ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 445 gaaaatggaagcactgactatactgggtgactcaatgacattttgattcatttcacaggt 504

                                                                       
Query: 305 tcttttggtgctaacaccaaatcctgctgtgacagtgatggcatctccccgccccccccc 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  
Sbjct: 505 tcttttggtgctaacaccaaatcctgctgtgacagtgatggcatctccccgccccccc-- 562

                                                                       
Query: 365 ctcctccgacacttcaaccattgctaccttcagaacaccaagggaaaaatgttccaggaa 424
            ||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 563 -tcccccgacacttcaaccattgctaccatcagaacaccaagggaaaaatgttccaggaa 621

                                                              
Query: 425 atgtatacaagaaccacccaggagaaaggctctacctgtgtgtgtgtgtgt 475
           ||||||||||||||||||  ||||||||||||||| |||||||||||||||
Sbjct: 622 atgtatacaagaaccacctgggagaaaggctctacgtgtgtgtgtgtgtgt 672


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 475
Length of database: 872
Length adjustment: 10
Effective length of query: 465
Effective length of database: 862
Effective search space:   400830
Effective search space used:   400830
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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