BAC Information

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BAC

Clone NameMSMg01-450A20
Chromosome19 (Build37)
Map Location 14,474,130 - 14,474,627
singlet/doubletsinglet
Overlap geneEG667433
Upstream geneOlfr1469, Olfr1470-ps1, Olfr1471, GA_x5J8B7W6KF8-5605544-5605301, Olfr1472, Olfr1473-ps1, Olfr1474, Olfr1475, GA_x5J8B7W6KF8-5563315-5562883, Olfr1477, GA_x5J8B7W6KF8-5546505-5545716, GA_x5J8B7W6KF8-5539992-5539494, LOC100041185, Olfr1480, GA_x5J8B7W6KF8-5515896-5515561, GA_x5J8B7W6KF8-5488050-5488655, Olfr1483-ps1, Olfr1484, GA_x5J8B7W6KF8-5463415-5462623, Olfr1486-ps1, LOC671653, Olfr1487, GA_x5J8B7W6KF8-5425983-5425664, Olfr1489, Olfr1490, Olfr1491, Olfr1492-ps1, Olfr1493-ps1, Olfr1494, Olfr1495, Olfr1496, Olfr1497, Olfr1498-ps1, Olfr1499, Olfr1500, Olfr1501, Olfr1502, Olfr1503-ps1, Olfr1504, Olfr1505
Downstream geneTle4, EG433225, EG635497, Pomc-ps1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-450A20.T7 (MSMg01no450_a20.b1)MSMg01-450A20.TJ (MSMg01no450_a20.g1)
ACCAG537875AG537876
length1,518758
length of high quality
(start - end)
---501 (74 - 574)
definitionCHROMAT_FILE: MSMg01no450_a20.b1 PHD_FILE: MSMg01no450_a20.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:19:50 2005CHROMAT_FILE: MSMg01no450_a20.g1 PHD_FILE: MSMg01no450_a20.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:19:50 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CGATACATGCCATCGTAGCATCTGATATACCAAAATAAATATTATAGATG
TTCTCTCACATGAAGAAGAGAGGAGCGAGTGAGTGGGCTTGGTGGTGTGT
TTTCTCCACATAAACGATCGCACACACACGGTGGACTACGCGCGACGCGT
CCTAGACGCTCTGCGCGATATGTCGAATGATTATACCGTTCACCGTTCAT
ACCACTCTGCTCTTACTACTTGTTACACCGTCTCGCGGACGTAGTTCTAA
CCTGCACACAGATTATTGCCTAGATATATTTATGCGCTGGTAGTTGTGTC
AGTCCGTACACGCAGGCGATAAGCTACACTACATACACCTTCTGTACGTC
GACTGCACCCCGCTCCGTNATTTATCGCGCTGGGCTTAGGACTAAACATN
GTTGACATGACAGCGCAGAGTAGGCGCGGCACGTCACCGTTCAGATACGT
ATCGATTCGCGCGTCGGCGTGCCATAATAGCGGTNACCACACGATACGTA
CACTATAGATGATATACCGAGAGCGCACAAGTCAGATTATATAAGTCATT
TATTTACCGTATTCATGTGAGCGCACAGTACAACCAGTTACATACAAAGA
TCATAACAGTAGTAGTAGTATATGATACACGTCGACTACTTGTCAACTGT
CTATCTACTTGGCGATTGTACGATTACAGGTTGTACGTCGCGCTTTCTCT
TCGCGATTCGTGCCGCTCTGCGCGCGGTGTCTGCGTATCGGATTGTTTTA
CACATTCTTATATTACACTACGAGACCACGCGTACTAGTATACCTAGCGG
AATAGTATAATATATATAAGTATATCATTAGCGTGCAGTGTGAACCATAG
GTAACGCGGTCGTTGTTATTACCGAGCAGATGATACAACGTATACGCCGA
CGCTGTGTACACCGCATTAACCGTACATAGGAGTNTACAACACCACTCCG
CGTGGACACGTCAANTGTATTGCTGCCNTTACTAAGCCAACAGGTGATGG
CAATAATGAGAAGATCGTTTTATAGCCGGGTGGGCAGTAGATACTCATNT
CTCTCAGCGTGTTAATCGAACGAGGCGGCGAGGAGGCACGTGAGTAGACT
AGGTTAGGTGCATATATCGGCCAGTGTAACACGCGGATGCTGCGCGAACG
CTGTGTGCCGCGCTATGACGTATGTCGCTTATATATACGGAGTATGCTAG
AGATTCACGTGGAGTCGTACACGGCTGCATGGCGACAGTCGACGCTTCGC
GATATATGTAGCGCTATAGCGATTGTATGCTATTAACTACGATTTACTTG
GCCGGCCCGATATATTGTGCGTCCGCAGTTCGTCGTGCCATCGCGTGACA
GTACGCGGTNGCACACTCGCGTGGCCGCATCGATATAGCGACAGACGCGC
GCACGCGACTGAGAGTATTGTATCGCGTAATCGACCGGTCTGGNGAGATC
TTCAACCGACTCGCGTCTGTGTGAGTGTNATCGTCGAGTATGTGATCGTG
ATGTGACTCNCAGCCCGN
GATTGATAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXACACTGACTTGTGGGAAGGGAAGGAGAG
AAAAGACAATGTCAATAAAAACATACTCAAATTTTTGGTTATTGATATGT
GCCTTTGATTTTAAGACTGATAAGATTGAGTAGAGACCGGTTGTTTAATA
ACTCTTGGGCAAAATGTAACTCAGAAATTCTCGTAGAATCTATGCATATG
CACAAATCAAAATGGTTGTAGAATTCCCTTTTGGGTTTTCATGCTTTGGT
AAGGAGATTTCTTGTATTATACTGACAGCCTTCATTCTGTCTATGGCCAC
TCTTTTGAGGAATTGCAATCCTTAAGGATTCCCTCCTTCAAAGGGCCATT
GTCCATGATGTTGAGTGGTTGACATCGCACAAAGCAATCAACATTTTGTA
TCCATGGATTCCACATGCAGGTATTCAACTAAATTCCAACTGAGAAGATC
TGAGGAAAGTAAATTGTCTCCACTGGACATTCCCAAATGGCTTTTCCTTG
TCATGATTCCTAATCAATATATTCTAATAACCATTTGCCTTGCTAAAATA
ATCTACTTGGCATTATTAGACATCTAATGATGATGTCAGTGCCATAGGGC
TGTGTGTCTTTTAAAGGCAATGTACTTCTGGTGCCTTGGGTGTATGCGTC
CTGGAACCAATTCTTCCTTTATCATTATCCTGCCACATGTTCATCCTCTA
TTGGCTAN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no450_a20.g1 MSMg01no450_a20.g1 CHROMAT_FILE:
MSMg01no450_a20.g1 PHD_FILE: MSMg01no450_a20.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:19:50 2005
         (501 letters)



>mm_chr19_14473930_14474830
          Length = 901

 Score =  909 bits (470), Expect = 0.0
 Identities = 491/498 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   cactgacttgtgggaagggaaggagagaaaagacaatgtcaataaaaacatactcaaatt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 cactgacttgtgggaagggaaggagagaaaagacaatgtcaataaaaacatactcaaatt 260

                                                                       
Query: 61  tttggttattgatatgtgcctttgattttaagactgataagattgagtagagaccggttg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 261 tttggttattgatatgtgcctttgattttaagactgataagattgagtagagaccagttg 320

                                                                       
Query: 121 tttaataactcttgggcaaaatgtaactcagaaattctcgtagaatctatgcatatgcac 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tttaataactcttgggcaaaatgtaactcagaaattctcgtagaatctatgcatatgcac 380

                                                                       
Query: 181 aaatcaaaatggttgtagaattcccttttgggttttcatgctttggtaaggagatttctt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 aaatcaaaatggttgtagaattcccttttgggttttcatgctttggtaaggagatttctt 440

                                                                       
Query: 241 gtattatactgacagccttcattctgtctatggccactcttttgaggaattgcaatcctt 300
           ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 gtattatacagacagccttcattctgtctatggccactcttttgaggaattgcaatcctt 500

                                                                       
Query: 301 aaggattccctccttcaaagggccattgtccatgatgttgagtggttgacatcgcacaaa 360
           ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 aaggattccctgcttcaaagggccattgtccatgatgttgagtggttgacatcgcacaaa 560

                                                                       
Query: 361 gcaatcaacattttgtatccatggattccacatgcaggtattcaactaaattccaactga 420
           |||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||
Sbjct: 561 gcaatcaacattttgtatccatggattccacatgcagggattcaactaaattacaactga 620

                                                                       
Query: 421 gaagatctgaggaaagtaaattgtctccactggacattcccaaatggcttttccttgtca 480
           ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 621 gaagatctgaggaaagtaaattgtctccactggacattcccaaatggtttttccttgtca 680

                             
Query: 481 tgattcctaatcaatata 498
           |||||||||| |||||||
Sbjct: 681 tgattcctaaacaatata 698


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 501
Length of database: 901
Length adjustment: 10
Effective length of query: 491
Effective length of database: 891
Effective search space:   437481
Effective search space used:   437481
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)