BAC Information

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BAC

Clone NameMSMg01-452B23
Chromosome19 (Build37)
Map Location 59,296,108 - 59,296,373
singlet/doubletsinglet
Overlap geneKcnk18
Upstream geneGfra1, LOC100043503, 1700011F14Rik, Pnlip, Pnliprp1, Pnliprp2, 1700019N19Rik, Hspa12a, 6430537H07Rik, 4930506M07Rik, LOC668626, Vax1, LOC668627
Downstream geneSlc18a2, Pdzd8, LOC100034727, LOC100043073, Emx2os, Emx2, Rab11fip2, LOC100043087, LOC100043091, LOC100043093, D19Ertd737e
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-452B23.T7 (MSMg01no452_b23.b1)MSMg01-452B23.TJ (MSMg01no452_b23.g1)
ACCAG539450AG539451
length740739
length of high quality
(start - end)
543 (128 - 670)300 (316 - 615)
definitionCHROMAT_FILE: MSMg01no452_b23.b1 PHD_FILE: MSMg01no452_b23.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:22:35 2005CHROMAT_FILE: MSMg01no452_b23.g1 PHD_FILE: MSMg01no452_b23.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:22:36 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CCTGTTTGAATTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCCGAGG
ATCCGCGGAATTCTTTTCTTTCTACAACTGGCCACCATACATCTCTTAAT
ATCTTCTATTGTCTTACAGAAGCAGGACTATCTCTGGAACGCTATTACTC
TTATGACTTTCATCTCTGTTTGAATTGCAACATAGTTCAACATGAAGCCA
TATTTGTGTTTCAAAGGAAAATAGAATGCATTTTACATGTTTATAACTAT
TTGAGATACAGACACACTAATCATAAAAGATGGAGGTCAAATATCTCTTT
TATAGTTGTCAAAACACAAATTGGACTACCTGCCTTCTGTACCTTCTTCC
ACATGCAGAGGATAACTGTAAACCACCTTAGGAAAAAAACTTAAAGGTTT
ATTGCATGCCCAACTCTTCTCAACCTTATTAATGGAGAAAAATATTGACA
GATATGATTTATTGAAATATGAATTTTATTGGACAATGGCGATACATAAT
TTGTGGCTAGAGAAAATATGATTTCACTTGGCACAGCTAGTAAATTGAAT
ACCATATCAAAGCCCAATTTTAAATGGATTATAGTTTATGGAGTAAATAC
TTAAAATACTGTTTAATTCTGTAGACTTTTGAGGTCAACTGTGAACTCCC
CACTTATCTCATCTCAGAAAGCAAAACATATATTGAAAGATGTTGGACCC
TCATCAAATGGGGCTGTAACACTTCTGACTTCCTGATAAC
AATTAATCTATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTGGAAGAAGGATACGCACAG
CATGATAAAGAGGTATGCAGCAAGGGTGGGCAGGGTGTGACAATCAGAGA
GGACCCTGAGGAGAGGCTAAAGGACCTGGGAATCCAGAAGGACCGATGCA
TACCTAGTGATGGAGACATTAAAGAGTTAACCCTGGGAGAAGCAATTCCA
AGAAGAAAGGCTGTCTCTGGGTGGTGAGAGATAAGGTAGCATGGTGGGTA
GGTTTGGGGTGTGGAGCAGACTGATCTGGGAGCTCTGGGAGCTCATCAAA
CCAGTGGCTCTGTATATTTCAGAAGCCAGGGCGTCTTACCACAGTCGGCC
TTGCTGAAAGCCCTTTGCTTCCACCCCCCTTATGGATGGCAGAGGCTTTT
ATTCCTCTTTGAAATGAATAAAGAAGCCTGGACATGGTGGTACATGACTG
TAATCCACCAGGCCAAAAATGGGAGGATTGGTGAGATCTGAAGCCAGCCT
GTCCTACATAGCAATTTCTAGGCCAACCGAGGGTAAGTAGCCAAGACCCT
GCCTCAAAAAGTAACAACAGTCACAAAACTCCAAACAATAATGAAACAAA
CAAAGCAAAAACATGAAACAAGTGCTTCAAATATTAAGAAATCCTTCAGA
GGGTTGAGGCTGCAGCTCAGGCAGTATATGGAGTGCTTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no452_b23.g1 MSMg01no452_b23.g1 CHROMAT_FILE:
MSMg01no452_b23.g1 PHD_FILE: MSMg01no452_b23.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:22:36 2005
         (300 letters)



>mm_chr19_59295908_59296607
          Length = 700

 Score =  408 bits (211), Expect = e-118
 Identities = 255/281 (90%), Gaps = 20/281 (7%)
 Strand = Plus / Plus

                                                                       
Query: 1   gcagactgatctgggagctctgggagctcatcaaaccagtggctctgtatatttcagaag 60
           ||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 201 gcagactgagctgggagctctgggagctcatcaaaccagtggctctgtatattgcagaag 260

                                                                       
Query: 61  ccagggcgtcttaccacagtcggccttgctgaaagccctttgcttccacccccctt---- 116
           || |||||||||||||||||||||||||||||||||||||||||||||      ||    
Sbjct: 261 ccggggcgtcttaccacagtcggccttgctgaaagccctttgcttccag-----ttgcaa 315

                                                                       
Query: 117 -atggatggcagaggcttttattcctctttgaaatgaataaagaagcctggacatggtgg 175
            | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 316 gagggatggcagaggcttttattcctctttgaaatgaataaagaagcctggacatggtgg 375

                                                                       
Query: 176 tacatgactgtaatccaccaggccaaaaatgggaggattggtgagatctgaagccagcct 235
           ||||||||||||||||||||||||||||||||||||||||||||||||          ||
Sbjct: 376 tacatgactgtaatccaccaggccaaaaatgggaggattggtgagatc----------ct 425

                                                    
Query: 236 gtcctacatagcaatttctaggccaaccgagggtaagtagc 276
           ||||||||||||||||||||||||||||||||||| |||||
Sbjct: 426 gtcctacatagcaatttctaggccaaccgagggtaggtagc 466


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 300
Length of database: 700
Length adjustment: 9
Effective length of query: 291
Effective length of database: 691
Effective search space:   201081
Effective search space used:   201081
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)