BAC Information

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BAC

Clone NameMSMg01-455J09
Chromosome19 (Build37)
Map Location 12,072,558 - 12,073,096
singlet/doubletsinglet
Overlap genenone
Upstream gene5033428B15Rik, AW112010, Ms4a8a, Gm336, LOC624395, 1700025F22Rik, Ms4a13, Ms4a12, Ms4a1, Ms4a5, Gm1276, Ms4a7, Ms4a4a, LOC435588, Ms4a4c, LOC433221, Ms4a4b, Ms4a6c, EG666926, Ms4a6b, Ms4a4d, LOC100040454, Ms4a6d, Ms4a2, Ms4a3, Plac1l, Oosp1, Gm97, Gif, EG666958, Mrpl16, Stx3, Olfr1417, Olfr1418, Olfr1419, EG622845, EG666985, Olfr1420, AV312086, Osbp
Downstream geneGA_x5J8B7W6KF8-6942124-6941700, Olfr1422-ps1, Olfr1423, Olfr1424, Olfr1425, Olfr1426, Olfr1427, Olfr1428, Olfr76, Olfr1555-ps1, Olfr1430-ps1, Olfr1431, Olfr1429-ps1, Olfr262, Olfr232, Olfr1433, Olfr1435-ps1, Olfr1436, Olfr1437, Olfr1438-ps1, Olfr1439-ps1, Olfr1440, Olfr1441, Pfpl, Mpeg1, Dtx4, EG625046, 4632417K18Rik, EG240549, Glyat, Olfr1442, Olfr1443, Keg1, Zfp91, Cntf, Lpxn, EG383436, Olfr1444, Olfr1445, Olfr1446, Olfr1447, EG433224, Olfr1448, Olfr1449, Olfr1450
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-455J09.T7 (MSMg01no455_j09.b1)MSMg01-455J09.TJ (MSMg01no455_j09.g1)
ACCAG542091AG542092
length726728
length of high quality
(start - end)
539 (73 - 611)595 (79 - 673)
definitionCHROMAT_FILE: MSMg01no455_j09.b1 PHD_FILE: MSMg01no455_j09.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:27:08 2005CHROMAT_FILE: MSMg01no455_j09.g1 PHD_FILE: MSMg01no455_j09.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:27:08 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NCCTTAXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCAAAAGAGGATGCG
CGGAATTCTGATTTGCCAGAAGAAAGGAGTCAGTGGTTAAGAGTATTGCT
CTTGCAGGGGACCAGAATTCTACTTCTAGCGCATCCCTGCCTGGAACTAC
ATACAACTCAGTGGATCCGATGTTCTTTGCCCTCACATGAATGCTTCCAC
ACACAGTTACAAACATGCATACATACTAAGGAATAACAATTTGGGGAATT
GTAACACACCCTTAACCTTAATATTAGGGGGACAGGCAGAAGGATCAGAA
TTCAAGGTCATCCTTGTTTGTTTCAGTGAGTTCAACGCCAGCCTGGTTTA
TATAATTCTGGAATTCCAAAAATAAATAAATTAATTAATTAAAAAAAAAA
GGAAGACAAGAAGAAAAAATTTTGAAAGAAAACCAGGTATGCTTTGGTAT
CACCTGTGGTGCTATCAAAAAATGTTTTTTAAAATCTACTATTACCCAGA
ATAGCCTCCAATTTTTCTATGTACCCCAGACTGCCTTCAAATTCACTATA
TAGCTAACGATGACCTTGAATTCCTGGTCTTTCCTCCTCCACCTTCCCAA
TCCTGGAATTACAGGCATGTATCCTGGTGACCTGTTTTGAGACACAATTT
TAAACATGCCTCTTCTATGTAGTCTGAGAACTAAGACCTAGGGAAACCCC
AGATTAAATCATTTGGCCCATTTCTA
CCCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXAATAACTCACTTAAAGAGATAC
AGGAGAACACTGCTAAAGAGTTACAAGTCCTTAAAGAAAAACAGGAAAAC
ACTGCTAAAGAGTTACAAGTCCTTAAAGAAAAACAGGAAAACACAACCAA
ACAGGTAGAAGTCCTTATAGAAAAACAGGAAAACACATCCAAACAGGTGA
TGGAAATGAACAAAACCATACTAGAGCTAAAAAGGGAAGTAGACACAATA
AAGAAAACCCAAAGTGATTTTTCGCTGGAGATAGAAACCCTAGGAAAGAA
ATCTGGAACCATAGATGCCAGCATCAGCAACAGAATACAAGAGATGGAAG
AGAGAATCTCAGGTGCAGAAGACTCCATAGAGAACATCGGCACAACAATC
AAAGAAAATGGAAAATGCAAAAAGATCCTAACTCAAAACATCCAGGAAAT
CCAGGACACAATGAGAAGACCAAACCTACTGATAATAGGAGTGGATGAGA
ATGAAGATTTTCAACTCAAAGGACCAGCAAACATCTTCAACAAAATTATT
GAAGAAAACTTCCCAAATCTAAAGAAAGAGATGCCCATGATCATACAAGA
AGCCTACAGAACTCCAAATAGACTGGACCAGATAAGAAATTCCTCCCGAC
ACATAATAATCAGAACATCAAATGCACT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no455_j09.b1 MSMg01no455_j09.b1 CHROMAT_FILE:
MSMg01no455_j09.b1 PHD_FILE: MSMg01no455_j09.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:27:08 2005
         (539 letters)



>mm_chr19_12072358_12073296
          Length = 939

 Score =  980 bits (507), Expect = 0.0
 Identities = 531/539 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   aaaggagtcagtggttaagagtattgctcttgcaggggaccagaattctacttctagcgc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 aaaggagtcagtggttaagagtattgctcttgcaggggaccagaattctacttctagcgc 260

                                                                       
Query: 61  atccctgcctggaactacatacaactcagtggatccgatgttctttgccctcacatgaat 120
           || ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 261 atacctgcctggaactacatacaactcagtggatccaatgttctttgccctcacatgaat 320

                                                                       
Query: 121 gcttccacacacagttacaaacatgcatacatactaaggaataacaatttggggaattgt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gcttccacacacagttacaaacatgcatacatactaaggaataacaatttggggaattgt 380

                                                                       
Query: 181 aacacacccttaaccttaatattagggggacaggcagaaggatcagaattcaaggtcatc 240
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 381 aacacacccttaaccttaatattagggggacaggcagaaggatcagaattcaaggttatc 440

                                                                       
Query: 241 cttgtttgtttcagtgagttcaacgccagcctggtttatataattctggaattccaaaaa 300
           ||||  ||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 441 cttggctgtttcagtgagttcaaagccagcctggtttatataattctggaattccaaaaa 500

                                                                       
Query: 301 taaataaattaattaattaaaaaaaaaaggaagacaagaagaaaaaattttgaaagaaaa 360
           |||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||
Sbjct: 501 taaataaattaattaatttaaaaaaaaaggaagacaagaagaaaaaactttgaaagaaaa 560

                                                                       
Query: 361 ccaggtatgctttggtatcacctgtggtgctatcaaaaaatgttttttaaaatctactat 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 ccaggtatgctttggtatcacctgtggtgctatcaaaaaatgttttttaaaatctactat 620

                                                                       
Query: 421 tacccagaatagcctccaatttttctatgtaccccagactgccttcaaattcactatata 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 tacccagaatagcctccaatttttctatgtaccccagactgccttcaaattcactatata 680

                                                                      
Query: 481 gctaacgatgaccttgaattcctggtctttcctcctccaccttcccaatcctggaatta 539
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 gctaacgatgaccttgaattcctggtctttcctcctccaccttcccaatcctggaatta 739


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 539
Length of database: 939
Length adjustment: 10
Effective length of query: 529
Effective length of database: 929
Effective search space:   491441
Effective search space used:   491441
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)