Query= MSMg01no455_j14.b1 MSMg01no455_j14.b1 CHROMAT_FILE:
MSMg01no455_j14.b1 PHD_FILE: MSMg01no455_j14.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:27:09 2005
(584 letters)
>mm_chr19_55176554_55177537
Length = 984
Score = 1098 bits (568), Expect = 0.0
Identities = 580/584 (99%), Gaps = 1/584 (0%)
Strand = Plus / Plus
Query: 1 aggctgtaagatatgtcactgacttccaaagaaacaacaaaatgctatatattgaaatct 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 aggctgtaagatatgtcactgacttccaaagaaacaacaaaatgctatatattgaaatct 260
Query: 61 gaacctacacaaaggagttacaggatcttaaggacccccaaagtatttttttattaaaat 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gaacctacacaaaggagttacaggatcttaaggacccccaaagtatttttttattaaaat 320
Query: 121 tacctttaaaagatagcagactgcttacaacaaaaataaaaacaatatactgtgcagtta 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tacctttaaaagatagcagactgcttacaacaaaaataaaaacaatatactgtgcagtta 380
Query: 181 atagcatatataactaacgtgtgaccagagaaggaaatgtaaccaacagagacagaaggt 240
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 381 atagcatatataactaacgtgtgaccagagaaggaagtgtaaccaacagagacagaaggt 440
Query: 241 ggagtagaaacgacggaaactcaagtcttactcagaccaagatccacattttcccactat 300
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ggaggagaaacgacggaaactcaagtcttactcagaccaagatccacattttcccactat 500
Query: 301 ttgcattgcctgtttaatagtccgtctttaaaaggcttccttcagtgatctaaatgaacc 360
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 501 ttgcattgcctgtttaatagtccgtctttaaaaggcttccttcagtgatctaaacgaacc 560
Query: 361 tgaggacatttgttccagttgctactgatccacaaatgtacacttccccacaaaagaata 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 tgaggacatttgttccagttgctactgatccacaaatgtacacttccccacaaaagaata 620
Query: 421 gcactaactgaattcaaaatccaatcatgtagtcgccatggcattgcttgatttcaaata 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 gcactaactgaattcaaaatccaatcatgtagtcgccatggcattgcttgatttcaaata 680
Query: 481 taacaattattctagaaagctttattagaagaaatcatttgaatgatgaagaggtccatg 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 taacaattattctagaaagctttattagaagaaatcatttgaatgatgaagaggtccatg 740
Query: 541 attttttttttctcctcatcttttctccaggctccttttgggta 584
|||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 741 attttttttt-ctcctcatcttttctccaggctccttttgggta 783
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 584
Length of database: 984
Length adjustment: 10
Effective length of query: 574
Effective length of database: 974
Effective search space: 559076
Effective search space used: 559076
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no455_j14.g1 MSMg01no455_j14.g1 CHROMAT_FILE:
MSMg01no455_j14.g1 PHD_FILE: MSMg01no455_j14.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:27:09 2005
(417 letters)
>mm_chr19_55328317_55329136
Length = 820
Score = 750 bits (388), Expect = 0.0
Identities = 409/420 (97%), Gaps = 8/420 (1%)
Strand = Plus / Minus
Query: 1 caagcagcttcctgaagtgggcagggaggagggatttgggatgcctctgtcacgcgtgca 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 442 caagcagcttcctgaagtgggcagggaggagggatttgggatgcctctgtcacgcgtgca 383
Query: 61 ggagccccgtcctaggatcacacccggctccagatcccttaccctgggaagggccgcacg 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 382 ggagccccgtcctaggatcacacccggctccagatcccttaccctgggaagggccgcacg 323
Query: 121 tacgccttggagcttccgagtgaggctttctggctccgg---cttgctggcaggagagcc 177
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 322 cacgccttggagcttccgagtgaggctttctggctccggcttcttgctggcaggagagcc 263
Query: 178 ccggtcctcccttcctcaccccgggcttctccgcgggcagggtgacttcagagcgtccat 237
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 262 tcggtcctcccttcctcaccccgggcttctccgcgggcagggtgacttcagagcgtcca- 204
Query: 238 gctttgcaggcaggcaggcaggcagcctggctagtggccccacttctgccctgccctgat 297
||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 203 ----tgcaggcaggcaggcaggcagcctggctagtggccccacttctgccctgccctgat 148
Query: 298 ctgtcccagccaggccatagccgggctttctgacatgctggtgctggggacttcacttcc 357
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 147 ctgtcccagccaggccatagccgggctttctgacatgctggtgctggggacttcacttcc 88
Query: 358 tggtttggcttttttttccctcctccttcacaactgaaagtggaagcgcttttgactagg 417
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 87 tggtttggcttttttttccctcctccttcacaactgaaagtggaaccgcttttgactagg 28
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 417
Length of database: 820
Length adjustment: 9
Effective length of query: 408
Effective length of database: 811
Effective search space: 330888
Effective search space used: 330888
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
