BAC Information

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BAC

Clone NameMSMg01-456G19
Chromosome19 (Build37)
Map Location 37,289,228 - 37,289,623
singlet/doubletsinglet
Overlap geneMarch5
Upstream geneLOC668195, Pcgf5, LOC668201, Hectd2, LOC668215, Ppp1r3c, Tnks2, Fgfbp3, Btaf1, Cpeb3
Downstream geneLOC668230, Ide, LOC100043010, Kif11, EG667490, LOC631069, Hhex, Exoc6, Cyp26c1, Cyp26a1, LOC668248, LOC668251, LOC209281, Fer1l3, Cep55, Gpr120, Rbp4, Pde6c, 5730455O13Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-456G19.T7 (MSMg01no456_g19.b1)MSMg01-456G19.TJ (MSMg01no456_g19.g1)
ACCAG542730AG542731
length748756
length of high quality
(start - end)
450 (68 - 517)400 (79 - 478)
definitionCHROMAT_FILE: MSMg01no456_g19.b1 PHD_FILE: MSMg01no456_g19.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:28:14 2005CHROMAT_FILE: MSMg01no456_g19.g1 PHD_FILE: MSMg01no456_g19.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:28:14 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NCTCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGC
GGAATTCTTTGTTTCTTTGTCTCGTTGGTTTGGTGTTTATAAAATTTTCC
TAATTTATTTCTATGTATGTATATGTCTGCACATGCGCATATATACATGT
ATGTAGGTACCCTGGAGGCCAGAGAGGTGTTGCATCCTCTGGACCTGCAT
TTATATGTGATTGTGAGCCATCTGGCATGGATACTGGGAACTGAGCTTGG
GTCATCTGGAAGAGCAGCAGGCATTCCTAACCTCTGAACTATTCCTTGCG
TTTGGCTTTTTGATTCTAAGTCTCACCCTAGCCAGACTGACCTAGACCTC
AACATGAAGTCCCCACACTGGTCTCATATTCATGATCCTCCTGCCTTAGC
CTCCTGAGTGCTGAAGGCCGTGAGCCACCAATCACAAGGCATCGTTTAAT
ATTCTAAGCTGCTTGCCCCCATTGTTTGCTGTGACTGTAAGAATTAATTT
CTTCACAGTGCCTGTTGAGAAACTCTTTAACATCTCACCTCTGATGTGCT
CAGCACAGTTCCCTGAAATGGAATATGTCTGCTTCCCACAAATTCCTCTC
CCTTCTCCGGACCTATTCTTCCCTAAAGAAACACTGGTTGACCTTGCCAT
ACATACATTTTGAAAAACCATGGTAATCTATTTTCCGGTTTTAATTTCCT
CCTTTTTTATTTTCTCTTTTTCCCCCACGTTTATTTTTTTTTCGCACN
ATTCACCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXAGTTAAACAAATACTTGGGGAT
AATAAGAATTTGAAATATATCAGTAAGTAAATGAGACCTTTCCCTTTTTG
AGTCTGTTTCAAAGCAGGTCTCTTCTGTAAATATAAATAGTTTCAAACTC
TGCGGCTGGCCATTTTTCAGTAAAACATTAGTTACAAAAATAGCTGTTGG
ATTTGGCCAAGGGCCAGTGGTTCTCCAACCATTGTTCTAATACTGAAAAT
AGATAAGGAAAGTATGTTCTTTCTTAAAACTGCTTTAGGAAAAAAAAGAA
ATACCACGAAGAAGAAAGTATGGTGTGTTAGGAATTGTCAGAGGGAACTT
TATTGAAGTAAAGACAGAATCAGCAAAGGAAACTGAAAATTGAGTAATGA
AATGTTCTGGATAGAGAAAAACCAACCATGTGTCAGAAAGAACATATGTC
ATATGTAGCTGATAGTATAAATAAATGGTACTGAGATTATACCACTGAAT
TTATATATTCGGAGGTCGTCTGTGATACACACGAAATACCTGGTTGGTAA
TTGCCTCACTGTTTCATTTATTTCACTCATTCCACCTCATTTACTTTTTT
TTTTTTTAGCCTATAAGACCTTCGATCTTTCAATATATTTTCTTACTTTT
ATCTTTTTATTCCCTTTTTTTTACCATTTTACAATTATCTAGATTTACAT
CTATCN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no456_g19.g1 MSMg01no456_g19.g1 CHROMAT_FILE:
MSMg01no456_g19.g1 PHD_FILE: MSMg01no456_g19.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:28:14 2005
         (400 letters)



>mm_chr19_37289028_37289827
          Length = 800

 Score =  679 bits (351), Expect = 0.0
 Identities = 387/401 (96%), Gaps = 6/401 (1%)
 Strand = Plus / Plus

                                                                       
Query: 1   agttaaacaaatacttggggataataagaatttgaaatatatcagtaagtaaatgagacc 60
           |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 201 agttaaacaaatacttggggataataagaatttgaaatatatcagtaagtaaatcagacc 260

                                                                       
Query: 61  tttccctttttgagtctgtttcaaagcaggtctcttctgtaaatataaatagtttcaaac 120
           ||||||||||||||||||||||||||||||||||||||||||||    ||||||| ||||
Sbjct: 261 tttccctttttgagtctgtttcaaagcaggtctcttctgtaaat----atagttttaaac 316

                                                                       
Query: 121 tctgcggctggccatttttcagtaaaacattagttacaaaaatagctgttggatttggcc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 317 tctgcggctggccatttttcagtaaaacattagttacaaaaatagctgttggatttggcc 376

                                                                       
Query: 181 aagggccagtggttctccaaccattgttctaatactgaaaatagataaggaaagtatgtt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 377 aagggccagtggttctccaaccattgttctaatactgaaaatagataaggaaagtatgtt 436

                                                                       
Query: 241 ctttcttaaaactgctttaggaaaaaaaagaaataccacgaagaagaaagtatggtgtgt 300
           ||  | | |||||||||||||||||| | |||||||||||||||||||||||||||||| 
Sbjct: 437 ctgccatgaaactgctttaggaaaaaca-gaaataccacgaagaagaaagtatggtgtgg 495

                                                                       
Query: 301 taggaattgtcagagggaactttattgaagtaaagacagaatcagcaaaggaaactgaaa 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 496 taggaattgtcagagggaactttattgaagtaaagacagaatcagcaaaggaaactgaaa 555

                                                    
Query: 361 attgagtaatgaaatgttctggatagagaaaaacc-aacca 400
           ||||||||||||||||||||||||||||||||||| |||||
Sbjct: 556 attgagtaatgaaatgttctggatagagaaaaacccaacca 596


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 400
Length of database: 800
Length adjustment: 9
Effective length of query: 391
Effective length of database: 791
Effective search space:   309281
Effective search space used:   309281
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)