BAC Information

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BAC

Clone NameMSMg01-457L01
Chromosome19 (Build37)
Map Location 56,138,272 - 56,138,575
singlet/doubletsinglet
Overlap genenone
Upstream geneGpam, Tectb, Gucy2g, Acsl5, Zdhhc6, Vti1a, LOC100043479, Tcf7l2, Ppnr
Downstream geneLOC100043484, Habp2, Nrap, Casp7, 9930023K05Rik, Dclre1a, Nhlrc2, Adrb1, EG629643, A630007B06Rik, 1700010L13Rik, Tdrd1, Vwa2, Afap1l2, Ablim1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-457L01.T7 (MSMg01no457_l01.b1)MSMg01-457L01.TJ (MSMg01no457_l01.g1)
ACCAG543696AG543697
length827774
length of high quality
(start - end)
92 (80 - 171)304 (84 - 387)
definitionCHROMAT_FILE: MSMg01no457_l01.b1 PHD_FILE: MSMg01no457_l01.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:30:00 2005CHROMAT_FILE: MSMg01no457_l01.g1 PHD_FILE: MSMg01no457_l01.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:30:00 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CTTCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCG
CGGAATTCACTAGGAGTTTCTTGAAAGAATTTGATAGATTGTGTATGAGA
GATGAAGAACAATTGTTTTGTCCCAGCCTTGGCTGGTTTGGGCTTGTTAC
AAGTTGAGGGAGCCAGTAGGGGCAGTTAAGATTTTATTTGAATATCTGTT
TCTTAGTCAGGTATGTTGATGGTCCTTGTTAGCTTTATAAGGAAGATGTG
CCAGTTATTTTGACATTATCTCTTGAATTTGGTTCTCTGGACAGTGGTTA
CCATTCTATTTTTTATAAACTTCTTTTTTGTCGGTTATTTGTTGTGTTTG
TTTGTTTGTGTTTTTTTCTCTTCTTTTTTCATTTTCTTCTCTCCACCCCC
CTTTTTCCTTTCTTGTTTTATCTCTTCCTCCTCTTTTATTTCCTCTACTC
TTCCCTTTCTCTCTTATTTTTTTCTCTCCTCTTCCTTCCTTTTCCTTCCT
TCATTTCTTCTCTTTCCCTTTCTTCCACCTTTTTTTTTTCTCTTTCTCCT
CTTCTTTTTCCATTATTCTTTCCTTTTTCCTCTTCTTCTCCCTTTCTCTT
TTTTTTCATCCTTTTTCCCTTTTTTTTTCCTCTTTTTCTTTTTCCCCTCC
TTTTTTATCTCTCACTCCTTTATTCACCCCTCTATCTCCCTTTTATCTCT
CTCTCTGTTTTTTTTTCTTATACTCTCTCTTCTTTTCTCCCCCGTATTTT
TTCCTCCCTTCCCTACCCTCTCCTCTCTTTTTCCCATTTCCCTTTCTTCC
CAATTATCTTCCCTCCACTACCTTTTT
NNNTTTACGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTCAGGCAGAGGTTGGTC
ATATCATTTTTCAATAGAGGCATTTCATGGTTTATTGATCTAACTCAAGA
ATAAGAAAAGACACTTATGGAGGGAAAGGAGTCCGGCTCAACTTATAAAA
TTAAATGGATCCTGAGCTAGGAGCTTTAAGGGAGTCCCCGGTGCTAAACA
AAACATTGAATGGACTGCATATAAACACTGGGTCCATATAAACAGGCGTG
ATTGTCTCCTTTATGGAGGCTCACAATATTTTTTCTTCATTGAGGGCAAG
GGGATTTATCCTCCATAGCACAGCTCCCCTGCAAGCATTGAGCCCTGATC
ATAAAGAAGGTTTCTGCCTTCCCCGCTTGTTATTTTAAAATGATCAGTTT
ATGTGATTACTCACTGGACGTGTTACTATTCTTATTAACATTTTTCTCTT
CTTATCGTTCCCCTTTTGAATATTGCCCCTTGTTTTTATCCTCATTTTCT
TTCCCTTTTTTTCTTCTGCACTTTTCTCTTTTTTCACTTTTCCTTTTTTT
TTTCTCCTACTTCTCTTTTTCTCCCTTCTCTTTTTTTTTTTTTCTTTTTT
TCTTTTTGTTCTTTTCTTCCCTTGTTCATCTTCTTTTTTTTTCTTTTTTG
TATTCACGCTATTTTTTTTTCACACTTCAATTCTTCTTCTTTGTTCTATT
TCTTTTTTTCTTTTTTTTCCTCTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no457_l01.g1 MSMg01no457_l01.g1 CHROMAT_FILE:
MSMg01no457_l01.g1 PHD_FILE: MSMg01no457_l01.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:30:00 2005
         (304 letters)



>mm_chr19_56138072_56138775
          Length = 704

 Score =  538 bits (278), Expect = e-157
 Identities = 297/310 (95%), Gaps = 12/310 (3%)
 Strand = Plus / Minus

                                                                       
Query: 1   tcaggcagaggttggtcatatcatttttcaatagaggcatttcatggtttattgatctaa 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 504 tcaggcagaggttggtcatatcatttttcaatagaggcatttcatggtttattgatctaa 445

                                                                       
Query: 61  ctcaagaataagaaaagacacttatggagggaaaggagtccggctcaacttataaaatta 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 444 ctcaagaataagaaaagacacttatggagggaaaggagtccggctcaacttataaaatta 385

                                                                       
Query: 121 aatggatcctgagctaggagctttaagggagtccccggtgctaaacaaaacattgaatgg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 aatggatcctgagctaggagctttaagggagtccccggtgctaaacaaaacattgaatgg 325

                                                                       
Query: 181 actgcatataaacactgggtccatataaacaggcgtgattgtctcctttatggaggctca 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 actgcatataaacactgggtccatataaacaggcgtgattgtctcctttatggaggctca 265

                                                                       
Query: 241 caat------attttttcttcattgagggcaaggggatttatcctccatagcacagctcc 294
           ||||      |      ||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 264 caatagcagca------cttcattgagggcaaggggatttatcctccacagcacagctcc 211

                     
Query: 295 cctgcaagca 304
           ||||||||||
Sbjct: 210 cctgcaagca 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 304
Length of database: 704
Length adjustment: 9
Effective length of query: 295
Effective length of database: 695
Effective search space:   205025
Effective search space used:   205025
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)