BAC Information

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BAC

Clone NameMSMg01-459P01
Chromosome19 (Build37)
Map Location 18,967,557 - 18,967,889
singlet/doubletsinglet
Overlap genenone
Upstream geneEef1a1-ps1, LOC383440, Ostf1, LOC666712, BC016495, LOC100042193, 2410127L17Rik, LOC100042184, D030056L22Rik, Trpm6
Downstream geneRorb
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-459P01.T7 (MSMg01no459_p01.b1)MSMg01-459P01.TJ (MSMg01no459_p01.g1)
ACCAG545414AG545415
length688776
length of high quality
(start - end)
---335 (76 - 410)
definitionCHROMAT_FILE: MSMg01no459_p01.b1 PHD_FILE: MSMg01no459_p01.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:33:03 2005CHROMAT_FILE: MSMg01no459_p01.g1 PHD_FILE: MSMg01no459_p01.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:33:03 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NATTTTTTTNNCNCCCNNNNNNNNNNNNNNNNNNNCCTCTCCCCCNNCCC
NNNCCNCNCNNNNCTCCCCNNNNNNNNCCCNCCCCCCCNNNNNNNNAACC
NCNCTTTTCTCCCCCACAANNNCNCCCCCCNNNCACNNNCNNAACTTTTC
CCCCNNNACNCNNCNNNNNNNNNNTTTNNCNTCCANNNNTCCNNNNNNNA
ACCCCCCCCTACCTTTNCCCNCCCCNANNNNGGCCNCCCCCTCAACCCCN
NNNNNCCCNNCCCCCCCCCCNCCCCCNNNNNNNAANCGNCAACCTTTTTC
CCNNNCCANNNNNNTTCTTACTACCNCCACCAACCTCCCATCTCCCTCTC
TTTTTTTTNTCTCGGGGGNNNNCCCCTCTCTTTTTCTTTTTTTTTTTTCT
CTTCTTGAAATAAATGAGTTTTTTTGTTTTTNCCNNNNNNNCCCNCCCCN
CCNNCCNNCCNNCCCCNNNCCCCNNCCCCCCCCCNCCCCCCNNCCCCCCC
CCCCCCCCCCCNNCCCCCCCCCCNCCNNCCNNCNNCCCNNCNCCCCCCCC
CCNCCCCCCCCCCNCCCCNCCCCCCCACTTTCCCCCCCCNNCCCNCCCCC
NCNNCCNCCCCCTCTCTCTCCCTCCTTATTATTTTTATCCTTTTTATTTT
AGTAAAAAGGAATAAGAAAAAAAANNNNGGAAANNNNA
GATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXTGACAACGAAGTCCTGAGAAATTTG
ACTTCTAGATGGGTCCTGTACCCTCCCTGTTCAAACAGAAGGCTTCGATT
GGAATAAGAGAATTAGGGCAGATAAGAAGACATGCATATTCTAGCATCTT
GGAGGGACAATGACGTACACAATTCTTTTCTAGGTGCAGAGCCTTGGTCA
TGGGTGGGATGTGGATGTAAGAGTCTAAGGAGAAGGCGAGGCCAGGAAGT
TCTTGTGCAGGAATCTATTGTTCAGGGACTTCTTTCCAAAGGCATTTATC
TATCTCTAGATTCTGAGCGGTATCTATCCTTTGCTGTCTTAGAGCTCTTT
GCAGCTCTTATGCATGAGAATAGATTTTATTTGGGTCCATTCCTTACTCT
GTGGCTTTGCCTACCATATGCTGGACCCCCCCCGTTTTTCCTCTCCCCCC
CCCCGTCTCTTGCCTGCTTTCTTGCCGCTCGCCGTATTTTTTATCCTCAT
ACTCATCCCTCCGTCGTTTTCTATTTTTCGCGTTCTTCCCTTCGTTTCGT
TCGCGCCCTCCGCCTATCTTTTTCTCTTCCCTCCTTTTATCCTTCATTTT
TTTTTCTTCCCCCCCCCTTCCTCTTTCATCCCCATTCACTAAACTCCTCC
TATTACCCCACCTCTTTACTGTGCCTGCCCCCCCCTGCTTTCTCTTTTCC
CCCTCTATATCCCTTCTTTTCCTTTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no459_p01.g1 MSMg01no459_p01.g1 CHROMAT_FILE:
MSMg01no459_p01.g1 PHD_FILE: MSMg01no459_p01.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:33:03 2005
         (335 letters)



>mm_chr19_18967357_18968091
          Length = 735

 Score =  598 bits (309), Expect = e-175
 Identities = 327/333 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   tgacaacgaagtcctgagaaatttgacttctagatgggtcctgtaccctccctgttcaaa 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tgacaacgaagtcctgagaaatttgacttctagatgggtcctgtaccctccctgttcaaa 260

                                                                       
Query: 61  cagaaggcttcgattggaataagagaattagggcagataagaagacatgcatattctagc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 261 cagaaggcttcgattggaataagagaattagggcagataagaagacatgtatattctagc 320

                                                                       
Query: 121 atcttggagggacaatgacgtacacaattcttttctaggtgcagagccttggtcatgggt 180
           ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 321 atcttggagggacaatgacgtgcacaattcttttctaggtgcagagccttggtcatgggt 380

                                                                       
Query: 181 gggatgtggatgtaagagtctaaggagaaggcgaggccaggaagttcttgtgcaggaatc 240
           |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 381 gggatgtggatgtaagagtctaaggagaaggcgaggtcaggaagttcttgtgcaggaatc 440

                                                                       
Query: 241 tattgttcagggacttctttccaaaggcatttatctatctctagattctgagcggtatct 300
           || ||||||||||||||||||||||||||||||||||||||||||||||||| || ||||
Sbjct: 441 tagtgttcagggacttctttccaaaggcatttatctatctctagattctgagtggcatct 500

                                            
Query: 301 atcctttgctgtcttagagctctttgcagctct 333
           |||||||||||||||||||||||||||||||||
Sbjct: 501 atcctttgctgtcttagagctctttgcagctct 533


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 335
Length of database: 735
Length adjustment: 9
Effective length of query: 326
Effective length of database: 726
Effective search space:   236676
Effective search space used:   236676
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)