BAC Information

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BAC

Clone NameMSMg01-464B20
Chromosome19 (Build37)
Map Location 9,815,926 - 9,816,461
singlet/doubletsinglet
Overlap genenone
Upstream geneStx5a, LOC100039902, Nxf1, 0610006I08Rik, 1810059G22Rik, Taf6l, LOC100039957, Polr2g, Zbtb3, Ttc9c, Hnrpul2, Gng3, Bscl2, 1110067I12Rik, D19Ertd721e, AI462493, 1810009A15Rik, Ints5, Ganab, B3gat3, Rom1, Eml3, Mta2, Tut1, Eef1g, Ahnak, Scgb1a1, Asrgl1, EG621699, LOC100040104, LOC623810, Pcna-ps2, LOC100040130, LOC100040137, LOC100040143, LOC100040152, Stxbp3b, LOC623688, LOC100040178, LOC100040192
Downstream gene6720475J19Rik, LOC100040203, Incenp, LOC100040215, Fth1, Best1, Rab3il1, Fads3, Fads2, LOC100040227, Fads1, Fen1, 1810006K21Rik, Gm98, Dagla, Syt7, Gm705, 4930579J09Rik, 0610038F07Rik, 5730453I16Rik, 2810441K11Rik, Tmem138, Cybasc3, Dak, Ddb1, Vwce, Pga5, 2210404E10Rik, Vps37c, Cd5
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-464B20.T7 (MSMg01no464_b20.b1)MSMg01-464B20.TJ (MSMg01no464_b20.g1)
ACCAG548607AG548608
length765770
length of high quality
(start - end)		577 (71 - 647)560 (72 - 631)
definitionCHROMAT_FILE: MSMg01no464_b20.b1 PHD_FILE: MSMg01no464_b20.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:38:46 2005CHROMAT_FILE: MSMg01no464_b20.g1 PHD_FILE: MSMg01no464_b20.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:38:46 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
ATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAAT
TCTTTGTTTAGCTTCGAGACCCATATTTTAATGGGGTTATTTGACTTTCT
GGAGTCCATCTTCTTGAGTTCTTTATATATATTGGATATTAGTCCCATAT
CTGATTTAGGTTAGGTAAAGATCGTTTCCCAATCTGTTGGTGGCCTTTTT
TGTCTTATTGACGGTGTCTTTTGCCTTACAGAAGCTTTGCAGTTTTATGA
GGACCCATTTTTCAATTCTCGACTTTACAGCACAAGCCATTGCTGTTCTA
TTCAGGAATTTTTCCCCTGTGCCCATATCTTTGAGGCTTTTCCCCACTTT
CTCCTAAATAAGTTTCAGTGTCTCTGGTTTTATGTGGAGTTCCTTGACCC
ACTTAGATTTGACCTTAGTACAAGGAGATAGGGATGGATCAATTTGCATT
CTTTACATGATCAATTTGCCACCAGTTGTGCCAGCACCATTTGTTGAAAA
TTGCTGTCTTTTTTTACTGAATGGTTTTAGCTCCCTTGTCAAAGATCAAG
TGACCATAGGTGTGTGTGTTCATTTCTGGGTCTTANATTCTATTCCATTG
GTCTACTTGTCTGTCACTATACCAGTACCATGCAGTTTTTATCACAATTG
CTCTGCAGGACAGCTTTAGGTCAGGTATGGCGATTCCACTAGAGGTTCTT
TTTATCCTTGAGAAGAGTTTTTCCTACCCTAGGTCTTTTCGCATTCCACA
CGCATTTGCTATCGC

ATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXAACAGAGATCTGCCTGCTTATGCCTCCAG
AGTGCTGGGATTAAAGGAATGTGCTATTACCACCCAGCTACTTTTCATTT
TTAATTATTTTTCCATGTACCTGCAGACTTGAGACTGCAGATTTAACAGG
ATATGTTAGACACTGCAGCCAGCTACTGTGACTGCTGATGAAAGACTGTG
TAATTTCCTGAATACTACAAAGCAAGGGACTGAAGAAAAATTATTGTGGG
ATCTCTTTGTTTCTGTTTCTTAGTACACATCTACAACTCCACACAAAACC
TTCTACAGAACACGTGTCCTCGCTATAAGATGCTCAGGAATAAAGAGGAA
GCAGAGAATGAGGAAATGGCCAACCAATGACTGGTCCAACCTGAAACACA
TGTTATGTAAAAGAGCCAGTTTCTGACCCTATTAATGATATTCTGCTATG
ATTGCAGTTAGAAGGCTACTACAACTGTCTTCTGAAAAACAGATGGAAAC
AGATGCAGAACCCACAGCCAAACAAAAGACAGTGATGGGGAATCTTCTGA
ATGAGTTGGACACAGTGAACTGGAGGTATGTAGGACTCCACAAGAAACCC
TACCGAGTCCACTAACCTGTGCCCATGTGGCCTCTCAGATTCTTAACCTC
CAACCATAGAACATTTCATGGCTGGACCTTTACTTCCCCACCATTTTTAT
CATAATTTGTAGCTTGGCCG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no464_b20.g1 MSMg01no464_b20.g1 CHROMAT_FILE:
MSMg01no464_b20.g1 PHD_FILE: MSMg01no464_b20.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:38:46 2005
         (560 letters)



>mm_chr19_9815726_9816685
          Length = 960

 Score =  899 bits (465), Expect = 0.0
 Identities = 524/561 (93%), Gaps = 28/561 (4%)
 Strand = Plus / Plus

                                                                       
Query: 1   aacagagatctgcctgcttatgcctccagagtgctgggattaaaggaatgtgctattacc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 aacagagatctgcctgcttatgcctccagagtgctgggattaaaggaatgtgctattacc 260

                                                                       
Query: 61  acccagctacttttcatttttaattatttttccatgtacctgcagacttgagactgcaga 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 acccagctacttttcatttttaattatttttccatgtacctgcagacttgagactgcaga 320

                                                                       
Query: 121 tttaacaggatatgttagacactgcagccagctactgtgactgctgatgaaagactgtgt 180
           |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tttaacaggatatgctagacactgcagccagctactgtgactgctgatgaaagactgtgt 380

                                                                       
Query: 181 aatttcctgaatactacaaagcaagggactgaagaaaaattattgtgggatctctttgtt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 381 aatttcctgaatactacaaagcaagggactgaagaaaaattattgtgggatttctttgtt 440

                                                                       
Query: 241 tctgtttcttagtacacatctacaactccacacaaaaccttctacagaacacgtgtcctc 300
           |||||  |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tctgtaacttagtacacatctacaactccacacaaaaccttctacagaacacgtgtcctc 500

                                                                       
Query: 301 ---gctataagatgctcaggaataaagaggaagcagagaatgaggaaatggccaaccaat 357
              |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 ctcgctataagatgctcaggaataaagaggaagcagagaatgaggaaatggccaaccaat 560

                                                                       
Query: 358 gactggtccaacctgaaacacatgttatgtaaaagagccagtttctgaccctattaatga 417
           |||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||
Sbjct: 561 gactggtccaacctgaaacacatgctatgtaaaagagccagtttctgaccctatcaatga 620

                                                                       
Query: 418 tattctgctatgattgcagttagaaggctactacaactgtcttctgaaaaacagatggaa 477
           |||||||||||| ||||||||||||||||||||||||||                     
Sbjct: 621 tattctgctatgcttgcagttagaaggctactacaactg--------------------- 659

                                                                       
Query: 478 acagatgcagaacccacagccaaacaaaagacagtgatggggaatcttctgaatgagttg 537
               |||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 660 ----atgcagaacccacagccaaacaaaagacagtgatggggaatcttctgaatgaattg 715

                                
Query: 538 gacacagtgaactggaggtat 558
           |||| ||||||||||||||||
Sbjct: 716 gacagagtgaactggaggtat 736


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 560
Length of database: 960
Length adjustment: 10
Effective length of query: 550
Effective length of database: 950
Effective search space:   522500
Effective search space used:   522500
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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