BAC Information

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BAC

Clone NameMSMg01-465P24
Chromosome19 (Build37)
Map Location 15,612,097 - 15,612,491
singlet/doubletsinglet
Overlap genenone
Upstream geneTle4, EG433225, EG635497, Pomc-ps1
Downstream geneLOC667482, Psat1, LOC100041424, Cep78, LOC100042048, Gnaq, E030024N20Rik, LOC624438, Gna14, LOC666665
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-465P24.T7 (MSMg01no465_p24.b1)MSMg01-465P24.TJ (MSMg01no465_p24.g1)
ACCAG550048AG550049
length1,236780
length of high quality
(start - end)
---398 (68 - 465)
definitionCHROMAT_FILE: MSMg01no465_p24.b1 PHD_FILE: MSMg01no465_p24.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:41:19 2005CHROMAT_FILE: MSMg01no465_p24.g1 PHD_FILE: MSMg01no465_p24.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:41:19 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
ACACTCTCCCGCATCACGCATACATATAATATCTATCACAAGTAAGCACA
GCGAGACAATATCACCGAACATTTAACACAAAAAAGTAGAGAACACATTT
CGACCACCCCGATTAAATTCGAGGGGCTCTATATATTATACACCCCAAAA
CACAGCTTGGCTCGAATAACTATACATAATAATCAAACCCAACAACCGTA
CATACAAAATAGATGCTCTACTAGTATCACTAAGAAATATCTTGGATAGT
GCGACCACACACCCCCCATTTTGTTATACTATGCTTAGTCTTTTAGTTTT
CTTCTACGCCAATGAACCTCTCTACCGTGACGCAGTTATATCTGTATATC
TGTGCGATTGTATGTGACCTGATATAGCTATCGTCAGCATATTACTTTGC
TATTTACCACTCCACTTCTATACCCTCAATTTCCTATTTGATCCTGATGG
CACCGTTTATGATGTAGGGCGATGGAAGGACGGGACGTGTCAATGACGCG
AGTGTGTTAGTTATAATGTGCAGGCGCTACAAGGATTATGGGACGTTGCT
GGATACGAACATAAAANTTCAAATATAACAACAATATCAAGCAAAACACC
CTCATCCAGAGTCATGACTAGAATAGCGTTTACGATAAACGCAAATTTAT
CATTACGAATATGATATTAACCGGCTCTCCTTTATGTTCGCTCAACTTAC
ACCGTATTCAATTACTTTTACACTATATATATGGGTGGAACAATTGACAC
ACAATTCAAAGTAGGAAGAAAGAACGGTATTATATGTATTCCACAAATGA
AGCAGTTATGTATACTAGATATAACGGCGCAGACGTCTTCATCCCACCAC
GCATAGCATATACTCACGATAAGACATCAGTGTATTTAGACAACGATGGC
GGACTGTTCAGTTGATGCTGCCGTCGCTGTGCGGCGAGTAACCATATTTA
CTAATTATACAGCGCCGGCGCCTAGATATAACGCTGTATTTATTTATCGA
CAGATCACCGCCGCACCCCTNAGTGTAGACGGTTGGCATGATATTACGAG
AACGTATAAATATAATAATATTCGCTAGTGCGACATTGTAGCCTAGACGC
CGCTAACATATGTACGCCGCACTGACGGCCCACGTATTATTTGTTATAAT
GTCCCATCGACGCGGTAATGAAACCCCAATAATCAATTATTCACTACTCA
TATAACAGAACACCACCTTCTTAACCATTACTCATN
GGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXAACTCAGGCTGGCAGTATTTCTCCAGACATGAC
AAACAGAGAAACTTGATTGAGGAACAGCCTGTTCAAGAGAGGGAGAAATG
CAGGCCTAAGATTTATTTCCCTTTTTTTTTTTTCTGATCTCCTATTGCCC
ATTGGTCAATGCATAACACCATGAGTCATCTTGCACACTTCTGGTTGACA
GCTCACATTCTACTTCCTCTGCTGTAGGGTATCATCCAAATGAAACAGAA
AGAAATCAGAAATATGGGGAAACAGGCTATTCCATCTGGCTGCTCTGGGA
TAATCAAAGAGAACTGCACTTGTTCAAATGAGTAATTGGCACTCCCTGGA
AGGCAGAAAGAGGAAAGAGTTCTTAGTAACCATAACTAAGACTGAACACA
TTGCTGAGGGCTAGAACCAATAGCACCTAGAGTCTTGGAAAAAGCCATTA
ACATATGCATGATATTAGCCTCCATATTAGATGACTTATATAATCCCATA
CTTTGGGTTTTATCATTACTGCTTTAAACAAATAACTTTAGTTTATTCCA
GGAGAAGTCCCTTTTTTTCCCAAAGAATTATATTATTATTTAATTAATTA
AGGGAAAGGAAACCCGTGGCCTGGTTTTCAACCACCCAAAAAGGGGTGGG
GGTCCCCTAAAAAGGATATTGAGCCCCCGGGGGGGTTGGGGATTAAACCA
AAAACCCGGCCAAAAAAACCAGGCTTTTTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no465_p24.g1 MSMg01no465_p24.g1 CHROMAT_FILE:
MSMg01no465_p24.g1 PHD_FILE: MSMg01no465_p24.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:41:19 2005
         (398 letters)



>mm_chr19_15611896_15612693
          Length = 798

 Score =  719 bits (372), Expect = 0.0
 Identities = 390/396 (98%), Gaps = 1/396 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   aactcaggctggcagtatttctccagacatgacaaacagagaaacttgattgaggaacag 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 202 aactcaggctggcagtatttctccagacatgacaaacagagaaacttgattgaggaacag 261

                                                                       
Query: 61  cctgttcaagagagggagaaatgcaggcctaagatttatttcccttttttttttttctga 120
           |||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||
Sbjct: 262 cctgttcaagagagggagaaatgcaggcataagatttatttcc-ttttttttttttctga 320

                                                                       
Query: 121 tctcctattgcccattggtcaatgcataacaccatgagtcatcttgcacacttctggttg 180
           ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 321 tctcctattgcccattggtcaatgcataataccatgagtcatcttgcacacttctggttg 380

                                                                       
Query: 181 acagctcacattctacttcctctgctgtagggtatcatccaaatgaaacagaaagaaatc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 acagctcacattctacttcctctgctgtagggtatcatccaaatgaaacagaaagaaatc 440

                                                                       
Query: 241 agaaatatggggaaacaggctattccatctggctgctctgggataatcaaagagaactgc 300
           ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 agaaatatgggaaaacaggctattccatctggctgctctgggataatcaaagagaactgc 500

                                                                       
Query: 301 acttgttcaaatgagtaattggcactccctggaaggcagaaagaggaaagagttcttagt 360
           |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 501 acttgttcaaatgagtaattggcagtccctggaaggcagaaagaggaaagagttcttagt 560

                                               
Query: 361 aaccataactaagactgaacacattgctgagggcta 396
           |||||||||||||||||||| |||||||||||||||
Sbjct: 561 aaccataactaagactgaacccattgctgagggcta 596


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 398
Length of database: 798
Length adjustment: 9
Effective length of query: 389
Effective length of database: 789
Effective search space:   306921
Effective search space used:   306921
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)