BAC Information

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BAC

Clone NameMSMg01-466B08
Chromosome19 (Build37)
Map Location 36,262,212 - 36,262,547
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100042292, A830019P07Rik, Htr7, Rpp30, Ankrd1
Downstream geneLOC668195, Pcgf5, LOC668201, Hectd2, LOC668215, Ppp1r3c, Tnks2, Fgfbp3, Btaf1, Cpeb3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-466B08.T7 (MSMg01no466_b08.b1)MSMg01-466B08.TJ (MSMg01no466_b08.g1)
ACCAG550112AG550113
length765775
length of high quality
(start - end)
456 (53 - 508)336 (86 - 421)
definitionCHROMAT_FILE: MSMg01no466_b08.b1 PHD_FILE: MSMg01no466_b08.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:41:26 2005CHROMAT_FILE: MSMg01no466_b08.g1 PHD_FILE: MSMg01no466_b08.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:41:26 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NGTACCATCTAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXCGCGGAATTCCACCATTTCCCTATATGAAGGCCTGCATCCCTTTCTCT
GTGGTCACCATTTTAAAGAATGTTTGGCCCCCTCATGCTGATTGTTTCTG
CAGAATAAATGCTTTTTGTGTTTGCATACTATGAGTCTGGGGTCTTCCTT
CAGTGATTTTCAGACTCTTACAATTCTAGATCCTGTTAAATTGGCCATTA
GTGTTAACCATTCCAGGTCTACTCCTTGTCAATTTCATACTCAAACATAA
TCACTCTGAAGCTATAACTTTCTACTTCTTCTCACCCTAAACTCAAGATG
CAAAATGTGTTCAATCTCTACAGTCCTCAGTCTTCAGTGTTCAAAAGTAT
AAATGCAGAGTCTCTATGAAACTGATGCAATCTCTTAACTATGAGCCCTA
ATAACATTTTAATAAGGAAAGTTATATACTCCTAACCTAAAAAGAGCACA
AAGCAGACACTCCTACTCCCAGAGGAAGGAATTGGGACTTAGAAAGTAAA
GATGGATCAAACAAGACTGGGCCCCAGCAAGACAAACACCAATTCTGCAG
TTCCATGCCCAGCATTCTGAGGCTTAATAAGAAAACCATTTGAACTTCCC
AACTGAACTCCGTTTCTTAAAAATCCTGTGCATCCGCGTAATTAAATCAT
ATTCCTCTTCCTTTGCCCGGGCTTTTGTCCTTGGGGATAAGACCCTTTTC
TTTGTTTCCCGCTTN
CCCTCCCTCGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTTTGACTTGTTACT
CAGGGGTAGCTGCCATTGTGATGGATTGGTTATCTGCAAAGTTTCTTTGC
TGGAAATACTGTCTCATGGATTATTTTGTTGCCGAACAATGATATCAGGG
ACGATGCAAAAGATGACATCTAAAATGCCTGAGGTGTTGTCTAGGCACTT
TGACTCAGAGCTGTAGTCTGTACATTCTTGATTCCTCTTTAAAAAACTGC
CTCAAATTTATATTTGTTCATCTGTGTAAGATACTCAGCTTGAAACCACT
CTCCTATCTTCCTCTTCCTCCTTAGAAATGTATTGATTTATTGAATACAT
TGGATGATAAGCCTGGTGCTAGTTGACATGCACTCCACCATCAATAATAT
GGACCCATCTGCTTTATTGCATTTTTAGCTTATCCATTATGTTTTGACAC
TTTCAAAATATTACCTTCCTTTGTTTTTTTTCTTTAACCAAACACCCTTG
TTCCTATCCATCATATCATCTATTATTCCTCCTGTACTTTTATCATTTAA
CCCCTCTCTTTTTTTCCAGCCCTAGCCCCTCATTATAATTTTTTTTTCTT
CTCTCATTACTTTTATTTATCAAACAATCTCCTCATAATTCTAATACGCG
CATTCTCCCTCATATAAACTTTTATCCCCTTCTTTTCGATTCTATATGCC
GCTTACCAATCAATACTTCTCATTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no466_b08.g1 MSMg01no466_b08.g1 CHROMAT_FILE:
MSMg01no466_b08.g1 PHD_FILE: MSMg01no466_b08.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:41:26 2005
         (336 letters)



>mm_chr19_36262012_36262747
          Length = 736

 Score =  627 bits (324), Expect = 0.0
 Identities = 333/336 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   ttttgacttgttactcaggggtagctgccattgtgatggattggttatctgcaaagtttc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 536 ttttgacttgttactcaggggtagctgccattgtgatggattggttatctgcaaagtttc 477

                                                                       
Query: 61  tttgctggaaatactgtctcatggattattttgttgccgaacaatgatatcagggacgat 120
           ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 476 tttgctggaaatactgtctcatggattattttgttgccgcacaatgatatcagggacgat 417

                                                                       
Query: 121 gcaaaagatgacatctaaaatgcctgaggtgttgtctaggcactttgactcagagctgta 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 416 gcaaaagatgacatctaaaatgcctgaggtgttgtctaggcactttgactcagagctgta 357

                                                                       
Query: 181 gtctgtacattcttgattcctctttaaaaaactgcctcaaatttatatttgttcatctgt 240
           |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 356 gtctgtacattcttaattcctctttaaaaaactgcctcaaatttatatttgttcatctgt 297

                                                                       
Query: 241 gtaagatactcagcttgaaaccactctcctatcttcctcttcctccttagaaatgtattg 300
           | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 296 ggaagatactcagcttgaaaccactctcctatcttcctcttcctccttagaaatgtattg 237

                                               
Query: 301 atttattgaatacattggatgataagcctggtgcta 336
           ||||||||||||||||||||||||||||||||||||
Sbjct: 236 atttattgaatacattggatgataagcctggtgcta 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 336
Length of database: 736
Length adjustment: 9
Effective length of query: 327
Effective length of database: 727
Effective search space:   237729
Effective search space used:   237729
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)