BAC Information

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BAC

Clone NameMSMg01-466P15
Chromosome19 (Build37)
Map Location 11,453,201 - 11,682,304
singlet/doubletdoublet
Overlap geneMs4a4a, LOC435588, Ms4a4c, LOC433221, Ms4a4b, Ms4a6c, EG666926, Ms4a6b, Ms4a4d, LOC100040454, Ms4a6d
Upstream geneSyt7, Gm705, 4930579J09Rik, 0610038F07Rik, 5730453I16Rik, 2810441K11Rik, Tmem138, Cybasc3, Dak, Ddb1, Vwce, Pga5, 2210404E10Rik, Vps37c, Cd5, Cd6, Slc15a3, Tmem132a, Tmem109, Prpf19, Zp1, Gpr44, Ccdc86, Ms4a10, E530011F12Rik, 5033428B15Rik, AW112010, Ms4a8a, Gm336, LOC624395, 1700025F22Rik, Ms4a13, Ms4a12, Ms4a1, Ms4a5, Gm1276, Ms4a7
Downstream geneMs4a2, Ms4a3, Plac1l, Oosp1, Gm97, Gif, EG666958, Mrpl16, Stx3, Olfr1417, Olfr1418, Olfr1419, EG622845, EG666985, Olfr1420, AV312086, Osbp, GA_x5J8B7W6KF8-6942124-6941700, Olfr1422-ps1, Olfr1423, Olfr1424, Olfr1425, Olfr1426, Olfr1427, Olfr1428, Olfr76, Olfr1555-ps1, Olfr1430-ps1, Olfr1431, Olfr1429-ps1, Olfr262, Olfr232, Olfr1433, Olfr1435-ps1, Olfr1436, Olfr1437, Olfr1438-ps1, Olfr1439-ps1, Olfr1440, Olfr1441, Pfpl, Mpeg1, Dtx4, EG625046, 4632417K18Rik, EG240549
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-466P15.T7 (MSMg01no466_p15.b1)MSMg01-466P15.TJ (MSMg01no466_p15.g1)
ACCAG550797AG550798
length779778
length of high quality
(start - end)		454 (72 - 525)450 (77 - 526)
definitionCHROMAT_FILE: MSMg01no466_p15.b1 PHD_FILE: MSMg01no466_p15.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:42:41 2005CHROMAT_FILE: MSMg01no466_p15.g1 PHD_FILE: MSMg01no466_p15.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:42:41 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(11,681,851 - 11,682,304)(11,453,201 - 11,453,650)
sequence
NNTTTCATAATTTGCGGTCGCTATACGACNCACTATTGCAAGAGAATCCG
CGGAATTCTAGAGTTTCCTAGATTTTACTCCAACATCTTGTTACAATAAA
TTTCTCTGGGATACTGAAAACACATCAGGAATCCATCTTCTCTTTCAGTC
TGGGCACATCTGGCCATTATTTTACTATGAGACCTGCAGAAGATTATTCT
GGCTTGAAATCAGGAAATGGGATGAAGTAGATGGTGCAAAAAGTATGCCA
ATTGTATCCTACAGAGTTTGATGACTTCTGAGTGAAGTGGCTAGTAAGCC
CCAGAGCTGCTCACTATTCTTATGACCCCTGGATCCAGAGGGACAGGCAC
AAGTCATAGCCAATAATAAAATAATAGTTTCTGGTGTGTCACTTGTGTGT
CAGCAGGTGGCAGAGAGGAGAGAGGCTAGGTCTATACTAGGTCTACACTA
GGTCTGCACTCAGTGTTCTGAGCTTTGAACATCTGAATGATTAGTAGCCT
AACATTCCTTGAAAAAAGTGAGCCTGATATGATCACCAGTCTGATGCCAG
GCAGGATTGGATGGGTTCCCAGGGTGGATAGCACGACAGAAACTATAACG
GCCCCCCGTGGTGACTGTATGCCTTGGTAAAGAATAATCCTTGTTTTTTA
AAAAATAAAAACCTGTGAACGTGTGTGTACAAAGAGTGTTTGTCATACAT
CCTCATTGTTTTGTTTTTTTCTCTCCTTTACATTCTCTCGTAGTCTCTTT
GTTTTACCTATTTTTTTCAAAATCAAGAA

NCCCGATGATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXACCCTAAATTATATTTCTTCTTCT
AGCATTGTTTCTGCTGCCATGTTAGTCATACAAGGAACAGAACAGAGTGC
ATTGGAAGCTGGCTATGGGGCACAGCAGAATGGACAACCTTTATATGTGA
ATTCGCATTCATGGAAAAGAATGACAGAGAAGTTCTTGAAGGGAGAACCC
AAAATCCTTGGGGTATGTTGATTCTGAGAGAACAACAGTGCTACAAATCC
ACAGATGACCACTGTATCATCGACCACGGTGTCCTGCTAGTTTCATTATG
CAACCGATGGTCTTGGAGGTATTGGTGTTTAATTTGTAGAACTTAGCTTC
TGAAAAGTAACATATTATCTTAATTTATATTCATTCGCATTGTAAATCTG
GCGAAAAGCCAGCAAGCATTATCCATAATGTATCCTGAATGATATACAGA
AACATTTTGCAGACACAGGCAAGGGCAAAAATGATATCTACCTTTAACCC
ACTTGCATGCACCCTCTGTGAGTGATCTACTTCTTCTCACTAAACCTTCC
TCTGGAAAAATTTCCAGAACTTTTCCAAAAAGCACTCCTTACCTGTGTGA
TTGTAGGGTATCTCCAAGAGATGTCTGTGCCGAAAATTTCCTTATTCACC
TCCTTAAATTCCTGAAACTACTATACCCACTTTCGTCATTGCCTTATAAG
ACGGCGCATTCTCTTTTATCACATCCTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no466_p15.b1 MSMg01no466_p15.b1 CHROMAT_FILE:
MSMg01no466_p15.b1 PHD_FILE: MSMg01no466_p15.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:42:41 2005
         (454 letters)



>mm_chr19_11681651_11682504
          Length = 854

 Score =  839 bits (434), Expect = 0.0
 Identities = 449/454 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   attttactccaacatcttgttacaataaatttctctgggatactgaaaacacatcaggaa 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 654 attttactccaacatcttgttacaataaatttctctgggatactgaaaacacatcaggaa 595

                                                                       
Query: 61  tccatcttctctttcagtctgggcacatctggccattattttactatgagacctgcagaa 120
           ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 594 tccatcttctctttcagtctgggcacatctggccattgttttactatgagacctgcagaa 535

                                                                       
Query: 121 gattattctggcttgaaatcaggaaatgggatgaagtagatggtgcaaaaagtatgccaa 180
           |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 534 gattcttctggcttgaaatcaggaaatgggatgaagtagatggtgcaaaaagtatgccaa 475

                                                                       
Query: 181 ttgtatcctacagagtttgatgacttctgagtgaagtggctagtaagccccagagctgct 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 474 ttgtatcctacagagtttgatgacttctgagtgaagtggctagtaagccccagagctgct 415

                                                                       
Query: 241 cactattcttatgacccctggatccagagggacaggcacaagtcatagccaataataaaa 300
           |||||  |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 414 cactaaccttatgacccctggatccagagggacaggcacaagtcatagccaataataaaa 355

                                                                       
Query: 301 taatagtttctggtgtgtcacttgtgtgtcagcaggtggcagagaggagagaggctaggt 360
           |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 354 taatagtttctggtgtgtcacttgtgtgtcagcaggtggcagagaggaaagaggctaggt 295

                                                                       
Query: 361 ctatactaggtctacactaggtctgcactcagtgttctgagctttgaacatctgaatgat 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 294 ctatactaggtctacactaggtctgcactcagtgttctgagctttgaacatctgaatgat 235

                                             
Query: 421 tagtagcctaacattccttgaaaaaagtgagcct 454
           ||||||||||||||||||||||||||||||||||
Sbjct: 234 tagtagcctaacattccttgaaaaaagtgagcct 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 454
Length of database: 854
Length adjustment: 10
Effective length of query: 444
Effective length of database: 844
Effective search space:   374736
Effective search space used:   374736
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no466_p15.g1 MSMg01no466_p15.g1 CHROMAT_FILE:
MSMg01no466_p15.g1 PHD_FILE: MSMg01no466_p15.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:42:41 2005
         (450 letters)



>mm_chr19_11453001_11453850
          Length = 850

 Score =  816 bits (422), Expect = 0.0
 Identities = 443/450 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   accctaaattatatttcttcttctagcattgtttctgctgccatgttagtcatacaagga 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 accctaaattatatttcttcttctagcattgtttctgctgccatgttagtcatacaagga 260

                                                                       
Query: 61  acagaacagagtgcattggaagctggctatggggcacagcagaatggacaacctttatat 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 acagaacagagtgcattggaagctggctatggggcacagcagaatggacaacctttatat 320

                                                                       
Query: 121 gtgaattcgcattcatggaaaagaatgacagagaagttcttgaagggagaacccaaaatc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gtgaattcgcattcatggaaaagaatgacagagaagttcttgaagggagaacccaaaatc 380

                                                                       
Query: 181 cttggggtatgttgattctgagagaacaacagtgctacaaatccacagatgaccactgta 240
           |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 381 cttggggtatgttgattctgagggaacaacagtgctacaaatccacagatgaccactgta 440

                                                                       
Query: 241 tcatcgaccacggtgtcctgctagtttcattatgcaaccgatggtcttggaggtattggt 300
            || | ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 acaccaaccacggtgtcctgctagtttcattatgcaaccgatggtcttggaggtattggt 500

                                                                       
Query: 301 gtttaatttgtagaacttagcttctgaaaagtaacatattatcttaatttatattcattc 360
           ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 gtttaatttgtagtacttagcttctgaaaagtaacatattatcttaatttatattcattc 560

                                                                       
Query: 361 gcattgtaaatctggcgaaaagccagcaagcattatccataatgtatcctgaatgatata 420
            |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 tcattgtaaatctggcgaaaagccagcaagcattatccataatgtatcctgaatgatata 620

                                         
Query: 421 cagaaacattttgcagacacaggcaagggc 450
           || |||||||||||||||||||||||||||
Sbjct: 621 caaaaacattttgcagacacaggcaagggc 650


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 450
Length of database: 850
Length adjustment: 10
Effective length of query: 440
Effective length of database: 840
Effective search space:   369600
Effective search space used:   369600
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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