BAC Information

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BAC

Clone NameMSMg01-467J23
Chromosome19 (Build37)
Map Location 41,006,190 - 41,192,665
singlet/doubletdoublet
Overlap geneBlnk, LOC100043155, Dntt, Tmem10, Tll2
Upstream geneLOC100042523, Cyp2c37, Cyp2c54, Cyp2c50, Cyp2c70, LOC545289, LOC676923, Pdlim1, LOC435599, Sorbs1, A930028N01Rik, Aldh18a1, LOC100043135, 4930521E07Rik, EG667723, Entpd1, EG667720, EG668310, EG668311, Ccnj, LOC664819, E030044B06Rik, E130314M14Rik, Zfp518
Downstream geneTm9sf3, Pik3ap1, LOC100043167, EG627352, Lcor, AI606181, Slit1, Arhgap19, Frat1, Frat2, Rrp12, LOC100042609, Pgam1, Exosc1, Zdhhc16, Mms19l, Ubtd1, Ankrd2, 0610010D20Rik, 4933411K16Rik, BC023055, Pi4k2a
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-467J23.T7 (MSMg01no467_j23.b1)MSMg01-467J23.TJ (MSMg01no467_j23.g1)
ACCAG551287AG551288
length736774
length of high quality
(start - end)		469 (67 - 535)447 (71 - 517)
definitionCHROMAT_FILE: MSMg01no467_j23.b1 PHD_FILE: MSMg01no467_j23.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:43:33 2005CHROMAT_FILE: MSMg01no467_j23.g1 PHD_FILE: MSMg01no467_j23.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:43:33 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(41,006,190 - 41,006,658)(41,192,219 - 41,192,665)
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCAAAAATCCGCGGAATTCC
TGTTAATTACGTGATCTTTTTTTCCCCTCCTGCAAGGAAGTTCTCAGTCT
CTCTGAAAATTCAGTTTATATCAGAAAATTTCAGGACCTGTGAATAGGAC
AGCTCCCAGCTCCCCATCTTCATTCCTCTGGAAGGTGAGCTACACCCCTG
AGAAGACATGGAAATGAAGCAACTCCTGGGTCTTTCCTGTCAGCATCATC
ACCCTTACTTCCTAACACTGATTATGATTAAAGAACATTTTAAAAGAGAC
TTTTAAGATCGCGTTTGTTTCAGGAATGGAAGTTTTATAAGCAGGGGGAA
GCAGGTAGGAACCTGTAAGCTTATCTTGAGTCCTTCCATCATCCAGTCCT
CTTACTATTGCCAGTGAAACTCTTTTGTGATAAATACAACGATACATTCA
TTCTGTTTATTTGGCACAGAGTGGAGCTGGAAAGCCAGGCGACTAGGGGA
GCCAGTCCGGAGCAAGAGTGAAATCAAGAAGTGTCCAAACCACTAAAACC
TCATCCTGAGACAGGCAGGAGTCAGGACTGTTCCCTCCTTACTCTGGGTC
TGCGTGGACATAGCGTGTACAATCCCCACCTCTGTCCCACTTGTAGTATT
CCCATACCGAATCCGGTGGGCCAAATTAAAAAGCTTGATTTCCTCCCCCC
CCTAAAAGGATTTGGCCCCCATTAACCTCTGATATN

GAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXCACTTTCTTCATTTCTTTAAAGGACGAACT
AGAAAAAGTAATTTTTCCCCCATGCAAGTTCTACATTCTAGACCCATTCA
TTACTGGGCAACCGTCAGAGACGAACAGGCCCAAGAACACACTGTAGACC
ATTCTAGTATAGCTTTCTGTAGCCCTGCATTTTCCTCTGCTTTCTTGTTT
GCTTGGTAGCTCTCTCAGAGGTGTACAGCAAAAAAGAAAAGACTTGGGAA
GGAGGTGAGATCACGCTGAAAACATAAATGAAAACAAAAGTGTATTTCCT
TTTGGCTTTCCTGGCATGCACTTCTGTATTCTCCCTGCTATGGCTGTCGC
TAGCAGTCACGAAGGCTCCAGGGTGGCTGGAGGCATGACTCTCAGTGTTA
GAGCATTTGCCTAGCATGCCCAAGGCTCTGGACTCAACCTCCTCTTTCAT
AACCAATCAGCAAATCAAGTCTACAATCCCCGAAACACTCTGTGGATGCC
AAGCCCAGAGTGGGTTCCTTTCAGTGGGGTGGCAGGTAATGTCCCTGCCC
CCGGAATTGGTTCCACTTCAGGGTTGGGAAAAGGAGAATCTGGACCCAAA
ATTTGGCCCCTGTGTGGTCCCAAAAACCCTTTTTTAGAAAACCGTGGGAA
ATAACCCCCTTGGGCCTAAAATGGAGGGTTTTCTCTTTGTTCCTACCCAA
CAAAAATGGCCCGGTTCTCTGGTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no467_j23.b1 MSMg01no467_j23.b1 CHROMAT_FILE:
MSMg01no467_j23.b1 PHD_FILE: MSMg01no467_j23.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:43:33 2005
         (469 letters)



>mm_chr19_41005990_41006858
          Length = 869

 Score =  799 bits (413), Expect = 0.0
 Identities = 455/469 (97%)
 Strand = Plus / Plus

                                                                       
Query: 1   tttttttcccctcctgcaaggaagttctcagtctctctgaaaattcagtttatatcagaa 60
           |||||||||||||||||||||||||||||||| ||||||| | |||||||||||||||||
Sbjct: 201 tttttttcccctcctgcaaggaagttctcagtttctctgagagttcagtttatatcagaa 260

                                                                       
Query: 61  aatttcaggacctgtgaataggacagctcccagctccccatcttcattcctctggaaggt 120
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gttttcaggacctgtgaataggacagctcccagctccccatcttcattcctctggaaggt 320

                                                                       
Query: 121 gagctacacccctgagaagacatggaaatgaagcaactcctgggtctttcctgtcagcat 180
           ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 321 gagctacacccctgagaagacatggaaatgaagcaactcctgggtctgtcctgtcagcat 380

                                                                       
Query: 181 catcacccttacttcctaacactgattatgattaaagaacattttaaaagagacttttaa 240
           |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 381 catcacccttacttcctaacactgattatgattaaagaacattttaaaagaggcttttaa 440

                                                                       
Query: 241 gatcgcgtttgtttcaggaatggaagttttataagcagggggaagcaggtaggaacctgt 300
           |||||||||||   ||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 441 gatcgcgtttgcagcaggaatggaagttttataagcagggggaagcaggcaggaacctgt 500

                                                                       
Query: 301 aagcttatcttgagtccttccatcatccagtcctcttactattgccagtgaaactctttt 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 aagcttatcttgagtccttccatcatccagtcctcttactattgccagtgaaactctttt 560

                                                                       
Query: 361 gtgataaatacaacgatacattcattctgtttatttggcacagagtggagctggaaagcc 420
           ||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 561 gtgataaatacaatgatacattcattctgtttatttggcacagagtggagccggaaagcc 620

                                                            
Query: 421 aggcgactaggggagccagtccggagcaagagtgaaatcaagaagtgtc 469
           ||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 621 aggcgactaggggagccagtctggagcaagagtgaaatcaagaagtgtc 669


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 469
Length of database: 869
Length adjustment: 10
Effective length of query: 459
Effective length of database: 859
Effective search space:   394281
Effective search space used:   394281
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no467_j23.g1 MSMg01no467_j23.g1 CHROMAT_FILE:
MSMg01no467_j23.g1 PHD_FILE: MSMg01no467_j23.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:43:33 2005
         (447 letters)



>mm_chr19_41192112_41192958
          Length = 847

 Score =  841 bits (435), Expect = 0.0
 Identities = 444/447 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   cactttcttcatttctttaaaggacgaactagaaaaagtaatttttcccccatgcaagtt 60
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 554 cactttcttcatttctttaaaggacgaactagaaaaagtaatttttcccccatgcaggtt 495

                                                                       
Query: 61  ctacattctagacccattcattactgggcaaccgtcagagacgaacaggcccaagaacac 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 494 ctacattctagacccattcattactgggcaaccgtcagagacgaacaggcccaagaacac 435

                                                                       
Query: 121 actgtagaccattctagtatagctttctgtagccctgcattttcctctgctttcttgttt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 434 actgtagaccattctagtatagctttctgtagccctgcattttcctctgctttcttgttt 375

                                                                       
Query: 181 gcttggtagctctctcagaggtgtacagcaaaaaagaaaagacttgggaaggaggtgaga 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 374 gcttggtagctctctcagaggtgtacagcaaaaaagaaaagacttgggaaggaggtgaga 315

                                                                       
Query: 241 tcacgctgaaaacataaatgaaaacaaaagtgtatttccttttggctttcctggcatgca 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 314 tcacgctgaaaacataaatgaaaacaaaagtgtatttccttttggctttcctggcatgca 255

                                                                       
Query: 301 cttctgtattctccctgctatggctgtcgctagcagtcacgaaggctccagggtggctgg 360
           ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 254 cttctgtattctccctgctatggctgtcgttagcagtcacgaaggctccagggtggctgg 195

                                                                       
Query: 361 aggcatgactctcagtgttagagcatttgcctagcatgcccaaggctctggactcaacct 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 194 aggcatgactctcagtgttagagcatttgcctagcatgcccaaggctctggactcaacct 135

                                      
Query: 421 cctctttcataaccaatcagcaaatca 447
           ||||| |||||||||||||||||||||
Sbjct: 134 cctctctcataaccaatcagcaaatca 108


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 447
Length of database: 847
Length adjustment: 10
Effective length of query: 437
Effective length of database: 837
Effective search space:   365769
Effective search space used:   365769
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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