BAC Information

Click to search

BAC

Clone NameMSMg01-467L12
Chromosome19 (Build37)
Map Location 17,232,484 - 17,232,947
singlet/doubletsinglet
Overlap geneA230083H22Rik
Upstream geneGnaq, E030024N20Rik, LOC624438, Gna14, LOC666665, Vps13a, Foxb2
Downstream geneGcnt1, Rfk, Pcsk5, Eef1a1-ps1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-467L12.T7 (MSMg01no467_l12.b1)MSMg01-467L12.TJ (MSMg01no467_l12.g1)
ACCAG551360AG551361
length756769
length of high quality
(start - end)
192 (121 - 312)469 (70 - 538)
definitionCHROMAT_FILE: MSMg01no467_l12.b1 PHD_FILE: MSMg01no467_l12.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:43:40 2005CHROMAT_FILE: MSMg01no467_l12.g1 PHD_FILE: MSMg01no467_l12.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:43:40 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTGCTAAACCAGCGCGGNAAT
CTTCAACTTACCAAGAACGAAGACAAGAAGCCAGGGAAGAGATTGGTTTC
AGCTTTGGTCAGAGATGGCCTGGCAGTGGGTAGAGGGTAATAAAGAGGTT
CACAACTGGTCAAAGTGCCATGTATAAGTAGCTGTGGCTGCTCATCTGTG
GATGAATCATCTATATCAAGTCCAAGGCTCAGGGAACAGCACATATGATG
GGAAAGGAAGAATGGAAAATCTGGAGGGTGGATGAGAGAGCTGTGAGATG
AATAGCTTCTATTCTTGTCTTGGCTGCAATATACACCAACTCTCAGATGC
CATGTTATCCTGAGCAAGACCTTTGCAAGATCCATCTAGTCAAAATTCCA
GCATGGCTGGCCAACCACCCTCCAAGGCCCAGTCCTTAGCAGAGGCTCCT
TTGTTTCCTGATGGTTATCACCGCCAGCATTGTCAATATCTGCTGTTATT
GGGCCTCAATTCATGTTTCACTCCCCTACGCCAATTCTTTCATCTTACAT
CCTGCTTCTCTTTTATTTTTTCTTCTTTCCCCCTCTATTCCCCCCTCTTC
GCTCGCCCCCCTCCTTCTTACCCCCCCACCTCTTCATCCATACCTTTTTT
TTCTTTGTTAACCCCCTACTCTTATCACCCGCTACCTTCTCCCATCACAC
CTTTTCTTCCTCTTTTCCCCCCCCTCTTTTCCTTTTCTCTCCTCCTCTTC
CCTTTC
TGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXCTTTCTCAGTTAAAGTTTCTGGAAAATGCCC
TCACAGACACATCAGAGATTAGCTCCGTATCCATATCAAGTTGACAGGGT
GAAGCACCACAACCAGTAGAAATGGAGAGAGGCTAAGTGAATCTGTAGGA
CTGTATGGCTGACTGTATTGGGAAGCCAGGATATAGGGAAGAATAAGTGC
CAGGTCCGGGCTTGGATGCCTAAGTGATGTGTGGCCATGTTCACAGGGAG
GGAACTCTATCATCTAGCTGATGCTGTGAGGTACATCATGCCCAGCGTTA
GCAGCTTCAGTCAGCAGGTGCTTATTATCTCCCAAGTTGTGAGTGGTAAG
AATTCAAGAGCAGAATAGCTAGGTGGTTCTGACTGCGGGCTTTATATTAA
GACACCTCCAGGACATCTGAGGCGGGAGGGGCTTCTTCTGGGCTTGCTCC
CATGGCTTTGGACAGATGTTGGACAGATGTTCTACTCCAAATTTTCACCC
ATTTTGATTTTGGTACAAGGTTATCCGGAGTTTATGACTCTTTTTATTCA
GCCTCCCCCCAGCTTCCTTCCTTTACGGGTCTTTTACAGACACACCCTTT
TTCTCTGCTCCCCTATCCCTCCTATTTACGCGGCGTTTTTTGGTAACCCC
CCCCCCTATCGCGCGTACGGTTATCCCTCTCCCCTCGCTCCCCATACCTC
CCTTGCGCTTCCCCCGCCG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no467_l12.g1 MSMg01no467_l12.g1 CHROMAT_FILE:
MSMg01no467_l12.g1 PHD_FILE: MSMg01no467_l12.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:43:40 2005
         (469 letters)



>mm_chr19_17232280_17233148
          Length = 869

 Score =  835 bits (432), Expect = 0.0
 Identities = 456/464 (98%)
 Strand = Plus / Plus

                                                                       
Query: 5   ctcagttaaagtttctggaaaatgccctcacagacacatcagagattagctccgtatcca 64
           ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 205 ctcagttaaagtttctggaaaatgccctcacagacacatcagagattagatccgtatcca 264

                                                                       
Query: 65  tatcaagttgacagggtgaagcaccacaaccagtagaaatggagagaggctaagtgaatc 124
           | |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 265 tgtcaagttgacagggtgaagcacgacaaccagtagaaatggagagaggctaagtgaatc 324

                                                                       
Query: 125 tgtaggactgtatggctgactgtattgggaagccaggatatagggaagaataagtgccag 184
           ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 325 tgtaggactgtatggctgactgtgttgggaagccaggatatagggaagaataagtgccag 384

                                                                       
Query: 185 gtccgggcttggatgcctaagtgatgtgtggccatgttcacagggagggaactctatcat 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| 
Sbjct: 385 gtccgggcttggatgcctaagtgatgtgtggccatgttcacagggagggaactctatcag 444

                                                                       
Query: 245 ctagctgatgctgtgaggtacatcatgcccagcgttagcagcttcagtcagcaggtgctt 304
           |||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||
Sbjct: 445 ctagctgatgctgtgaggtacatcgtgcccagcgttagcagcttcagtgagcaggtgctt 504

                                                                       
Query: 305 attatctcccaagttgtgagtggtaagaattcaagagcagaatagctaggtggttctgac 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 attatctcccaagttgtgagtggtaagaattcaagagcagaatagctaggtggttctgac 564

                                                                       
Query: 365 tgcgggctttatattaagacacctccaggacatctgaggcgggaggggcttcttctgggc 424
           || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 tgagggctttatattaagacacctccaggacatctgaggcgggaggggcttcttctgggc 624

                                                       
Query: 425 ttgctcccatggctttggacagatgttggacagatgttctactc 468
           ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 625 ttgctcccatggctttggacagatgttggacagatgttctactc 668


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 469
Length of database: 869
Length adjustment: 10
Effective length of query: 459
Effective length of database: 859
Effective search space:   394281
Effective search space used:   394281
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)