BAC Information

Click to search

BAC

Clone NameMSMg01-469F02
Chromosome19 (Build37)
Map Location 58,811,572 - 58,811,923
singlet/doubletsinglet
Overlap genePnliprp1
Upstream geneAtrnl1, Gfra1, LOC100043503, 1700011F14Rik, Pnlip
Downstream genePnliprp2, 1700019N19Rik, Hspa12a, 6430537H07Rik, 4930506M07Rik, LOC668626, Vax1, LOC668627, Kcnk18, Slc18a2, Pdzd8, LOC100034727, LOC100043073, Emx2os, Emx2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-469F02.T7 (MSMg01no469_f02.b1)MSMg01-469F02.TJ (MSMg01no469_f02.g1)
ACCAG552582AG552583
length765773
length of high quality
(start - end)
477 (70 - 546)356 (81 - 436)
definitionCHROMAT_FILE: MSMg01no469_f02.b1 PHD_FILE: MSMg01no469_f02.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:45:52 2005CHROMAT_FILE: MSMg01no469_f02.g1 PHD_FILE: MSMg01no469_f02.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:45:52 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CCCTCACXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCCAGAGGATCCGC
GGAATTCTCAACTGGTAGAATACAAAATGGCTGAGAAGCACCTAAAAAAA
TGTTCAACATCCTTAGTCATCAGGGAAATGCAAATCAAAGCAACCCGGAG
ATTCCACCTCACACCAGTCAGAATAGCTAAGATCAAAAATTCAGGTGACA
GCAGATGCTGGCGAGGATGTGGAAGAGGAACACTCCTCCATTGTTGGTGG
GATTGCAAGCTGGTACAACCACTCTGGAAATCAGTTTGGCAGTTCCACAG
AAAATTGGACATAGTATTACCTGAAGACCCAGCAATACCTCTCCTGGGCA
TATATCCAGAAGATGCTCCAACCGGTAAGAAGGACACATGCCACTATGTT
CATAGCAGCCTTATTTATAATAGCCAGAAGCTGGAAAGAACCCAGATGTC
CCTAAATAGAGGAATGGATACAGAAAATGAGGTACATTTACACAATGGAG
TACTGCACAGCTATTAAAAACAATGAATTTATGAAATTCCTAGGCAAATG
GATGGATCTGGAGGACATCATCCTGAGTGAGGTAACCCAATCATAAAAGG
CAGCTTCATTAGAAAAGGTAGATCTAATGTTTCCTTAACAGCACAAGAAA
GACGAAGTTGCTTATGGTATGGAGCGCGTGGAAGTTTTCCCTTCGAACTT
TACATGCTTTATTCTTTTATCCCCTTTTTCGCCCTTTTTCGTCTCCACTT
CTCGTCTTTTCCCTT
CTTTCAATGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCCCCATCTGCTATTCCTC
CAGTCTGCACTGGGGGTGACTTTCCTCACACATCCCCTTCTATGTTTGAT
CTGCAGAAAGGCATGTTCCTTCCCCTTCTAATCTCTGTTGATTTTTTTTT
CTCTTCAAGCTAGAATCCAGAGTACCCTTTTGCAGGATGCCTCCCAAGCT
CCTATCAACGTGATCTGTTCTCTGATCATCCTCTTCTGTGTGGTTCATCT
GTGTGTGCGTTCTGAGGGTGTAGTATGTAGAAAGAAGGCACGATGGAATC
CCACCCAGTAGGACCTCCGTGTGTGGTGCTCTTCATTCATGGCAGAATAA
TAGCTTACAGACTCAAAGTCCCTGTAGGAAGCGCAGGGGTATGCAGTAAA
CCCATCTGGGTTAAGGATGCTCTCTAAGTAGTACTTGTAGCTTCTCCGGT
GGTTACAAGTCACAAAGTTCTGGGTTTCTGGGGAGACAAAGCATGATGTC
ACTTCTTCTTGATGGACTCTCCGTTTTGCCTTATCTACGTCCTCTTTTCT
CAATTGTATACCCTCCTTATTGTTAATCCACCTTTTTTACCTTTTTTTTC
CCCTGTCCTTCTTCCCTTCCTGTGCTTTAACTCTTTTTTCTCCCCCCCCT
TTCACTTTTTTTGCTCTTCCTTGTCTTTGTCCATTATCCTTTCTTTTTTC
CGCTTATTTCGCCCCACCCATCT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no469_f02.g1 MSMg01no469_f02.g1 CHROMAT_FILE:
MSMg01no469_f02.g1 PHD_FILE: MSMg01no469_f02.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:45:52 2005
         (356 letters)



>mm_chr19_58811368_58812123
          Length = 756

 Score =  603 bits (312), Expect = e-177
 Identities = 342/352 (97%)
 Strand = Plus / Minus

                                                                       
Query: 5   ccatctgctattcctccagtctgcactgggggtgactttcctcacacatccccttctatg 64
           |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 556 ccatctgctattcctccagtctgcactgggggtgactttcctcacacaaccccttctatg 497

                                                                       
Query: 65  tttgatctgcagaaaggcatgttccttccccttctaatctctgttgatttttttttctct 124
           ||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||
Sbjct: 496 tttgatctgcagaaaggcaagttccttccccttctaatctctattgatttttttttctct 437

                                                                       
Query: 125 tcaagctagaatccagagtacccttttgcaggatgcctcccaagctcctatcaacgtgat 184
           |||||||||| ||||| |||||||| |||||||||| |||||||||||||||||||||||
Sbjct: 436 tcaagctagattccagtgtacccttctgcaggatgcatcccaagctcctatcaacgtgat 377

                                                                       
Query: 185 ctgttctctgatcatcctcttctgtgtggttcatctgtgtgtgcgttctgagggtgtagt 244
           ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| 
Sbjct: 376 ctgttctctgatcatcctcttctgtgtggttcatctgtgtgtgtgttctgagggtgtagc 317

                                                                       
Query: 245 atgtagaaagaaggcacgatggaatcccacccagtaggacctccgtgtgtggtgctcttc 304
           |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 316 atgtagaaagaaggcacgatggaaccccacccagtaggacctccgtgtgtggtgctcttc 257

                                                               
Query: 305 attcatggcagaataatagcttacagactcaaagtccctgtaggaagcgcag 356
           ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 256 attcatggcagaataatagcttacagactcaaagtccctgtaggaagcgcag 205


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 356
Length of database: 756
Length adjustment: 9
Effective length of query: 347
Effective length of database: 747
Effective search space:   259209
Effective search space used:   259209
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)