Query= MSMg01no469_p15.b1 MSMg01no469_p15.b1 CHROMAT_FILE:
MSMg01no469_p15.b1 PHD_FILE: MSMg01no469_p15.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:46:44 2005
(464 letters)
>mm_chr19_19752966_19753829
Length = 864
Score = 799 bits (413), Expect = 0.0
Identities = 452/465 (97%), Gaps = 2/465 (0%)
Strand = Plus / Minus
Query: 1 ccatccattctaatccacatggacactgcatttcatgagttttgcttactagtctgccca 60
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 664 ccatccattctaatccacatggacactgcatttcatgagttttgcttaatagtctgccca 605
Query: 61 attttaaatctgttctgtagtcaaagaatcccagagagtgattccctagagcttggagcc 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 604 attttaaatctgttctgtagtcaaagaatcccagagagtgattccctagagcttggagcc 545
Query: 121 tgaggcatgattgtgggcttttgacttcatgcttgtcaccacaaaacagaagggactatt 180
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 544 tgaggcatgattgtgggcttttggcttcatgcttgtcaccacaaaacagaagggactaac 485
Query: 181 tggctgtagagaattttatttgcatcaaatgtctgaatcccaacctgagtcaagcatatt 240
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 484 tggctgtagagaattttatttgcatcaaatgtctgaatcccaacatgagtcaagcatatt 425
Query: 241 gttgtaatc-atttacccaatccacacagacaaatgaatcgagatactaatctaatgaat 299
||||||||| | ||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 424 gttgtaatctacttacccaatccacacagacaaatgaatcgagatacaaatctaatgaat 365
Query: 300 taattaatatcaattctttaatacatgaactttcagggacagcttacaacactaaacact 359
||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 364 taattaatatcaactctttaatacatgaactttcagggacagtttacaacactaaacact 305
Query: 360 ttacatgtggtgaagaatagactttgtattggtgttaattctaagcctactaaaaagcta 419
||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 304 ttatgtgtggtgaagaatagactttgtattggtgttaattctaagcctactaaaaagcta 245
Query: 420 aagctaacattgaatgttagaggctaataccatttattttattat 464
|||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 244 aagctaacattgaatgttagaggctaatac-atttattttattat 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 464
Length of database: 864
Length adjustment: 10
Effective length of query: 454
Effective length of database: 854
Effective search space: 387716
Effective search space used: 387716
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no469_p15.g1 MSMg01no469_p15.g1 CHROMAT_FILE:
MSMg01no469_p15.g1 PHD_FILE: MSMg01no469_p15.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:46:44 2005
(479 letters)
>mm_chr19_19581798_19582677
Length = 880
Score = 849 bits (439), Expect = 0.0
Identities = 473/495 (95%), Gaps = 20/495 (4%)
Strand = Plus / Plus
Query: 1 caatgtaaaagtagtataggagtctgaaaagagctgttggtgatgaattagaaaatacat 60
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 caatgtaaaagtagtgtaggagtctgaaaagagctgttggtgatgaattagaaaatacat 260
Query: 61 gaagtggacagtatgggattcagagtaggagtctgaaattggaggacaactttttatttt 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gaagtggacagtatgggattcagagtaggagtctgaaattggaggacaactttttatttt 320
Query: 121 attcacatagctcatatgctcaccttattttcatgtgcatctgggaaaactggtttgatc 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 attcacatagctcatatgctcaccttattttcatgtgcatctgggaaaactggtttgatc 380
Query: 181 taccaacaggtttggaatgttgaaatgagctaagtctggaaaccattcagtgttacttaa 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 taccaacaggtttggaatgttgaaatgagctaagtctggaaaccattcagtgttacttaa 440
Query: 241 aatatttt----atgctgtttcacataatagaaaatgtaaaagcgtcataattacttctt 296
|||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 aata----gaaaatgctgtttcacataatagaaaatgtaaaagcgtcataattacttctt 496
Query: 297 tggcctccagataaaatcagacaaacccattttattttttt-ggtaccacctctttatta 355
||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||
Sbjct: 497 tggcctccagataaaatcagacaaacccattttattttttttggtaccatctctttatta 556
Query: 356 aaatcctccagttaaagaataatatttatttatttatt-----------tatttatttat 404
|||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 557 aaatcctccagttaaagaataatatttatttatttattatttatttatttatttatttat 616
Query: 405 tttaattttttaacttattgactttacatcctgctcacaccctccatcaatccttaccac 464
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 617 tttaattttttaacttattgactttacatcctgctcacaccctccatcaatccttaccac 676
Query: 465 acctccccttttcct 479
|||||||||||||||
Sbjct: 677 acctccccttttcct 691
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 479
Length of database: 880
Length adjustment: 10
Effective length of query: 469
Effective length of database: 870
Effective search space: 408030
Effective search space used: 408030
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
