BAC Information

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BAC

Clone NameMSMg01-470L11
Chromosome19 (Build37)
Map Location 17,016,868 - 17,017,252
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100041424, Cep78, LOC100042048, Gnaq, E030024N20Rik, LOC624438, Gna14, LOC666665, Vps13a, Foxb2
Downstream geneA230083H22Rik, Gcnt1, Rfk, Pcsk5, Eef1a1-ps1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-470L11.T7 (MSMg01no470_l11.b1)MSMg01-470L11.TJ (MSMg01no470_l11.g1)
ACCAG553654AG553655
length747761
length of high quality
(start - end)
89 (79 - 167)365 (78 - 442)
definitionCHROMAT_FILE: MSMg01no470_l11.b1 PHD_FILE: MSMg01no470_l11.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:47:43 2005CHROMAT_FILE: MSMg01no470_l11.g1 PHD_FILE: MSMg01no470_l11.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:47:43 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CTTATXXXXXXXXXXXXXXXXXXXXXXXXXXXAAGCGACAACCAGCCGCG
GAATCATCTTGGTTCCGCTCTCAGTCAAATGAATTCAGGGAGTTCAAGAC
CTGAACTTTCTTTCCTTAATGAGTTACCGGCACATTTTGGTGTCTCTGAG
TCTATCTTTAATACATTTAAGCGGGACACTGTTCTACAGCATGGCCACAT
TTCATCCGTCCCCCTTCATCTCCTAGTGTGTCCTTCTAGATGAAGGACTT
TACTGCAACCAAGCTAAAAGCCCTGGCTCCATCAACACACTTGAAACTTG
CTGTACCCACGCCCTGTTTGTATTTTATCAAGACTCAGCAGAATTTTGCA
ACAGGTACATAAATCAAACTGAGTAGAACTCTTTGGATTTTCCTGTTCAA
AATTACACAGAAACCCAGGAGTCTCATCTGGAATTTTAGGACTCCCTCGT
GCCTTCCTGTCTACCAGCCCGAGACTTATCTTCAGGACAGCTTTCTGTCC
CATCGTTCCTATCTCCAAGACACAAAGCCAAACGTGTAGGCTTCTTCCCA
GTAGCAGACTACAACGAACGCGACTTGTATCTGCTGACGAAAGCTCGCTT
ATACCACCTGTGCCCGCCCCCACTGCGCCGTTCGGTACCTGCCACCTGCC
TTAAATCTCAACTATCCCCATAATCCCCCATTCATGTGTCCCCGTTCTCC
TACCCTCCCAACGAACGCAAAGCGCCACCTCCCCTACCGTCTAATAA
CCGATGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXCAAATGATTAACTGGGAACTCTGAA
AGATTCCGAGGAAAGTTGTGGCATTTTATTTTTATTTTATTTCAATTTTT
TGCAGGCATTCAAATGAGTGAAGAGTCCTATGCAAAAAGACTGTCTTTCA
GAATTGTAGGTCCAAATTTATGTAAATAGAATTCTAGAGCCTGTGCTGAA
CTTCCCAAGGGAGAAGAATAATAAATGTCCTCTGTTCTTAGAGCATGACA
TTCACATGTTATTATTATTATTATTTGTGGGTCTTTCTTCAAACCTATTT
TTACAAGACTAAGGTACATTATTTCACACAATGTCCTTAAGTGATTTTCG
TATGTATTTGTGCTCTGTGCATGCATGTACCAGCATCCCTGTATGTAGAG
GCCAGAGGGCATGACGGGTACCCTCTATGATGGTTCTACATCTTAACTTT
TTTGAGACAGGTTCTCTCTCTGAATCCTAAATTCACTCCTTTGCCTAACC
CAGCTACCCAGGTGCACCCATCCATCCTGCTTCCCGGCGTAAGAATCCCA
CACCCCGTGTCACTCCTACTATCCCTTACTAAGTATCATAAGCCCCCCCT
TCTTGAGTTTTTGTTGTTTTTGCTTTGCATTCCCCAACTTATCCTCTCTG
GCACTCTCCCTTGTCCTATTCTACTCCAATGTAGTCATTTCCCCTGACCT
CCCCTTCTCTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no470_l11.g1 MSMg01no470_l11.g1 CHROMAT_FILE:
MSMg01no470_l11.g1 PHD_FILE: MSMg01no470_l11.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:47:43 2005
         (365 letters)



>mm_chr19_17016686_17017452
          Length = 767

 Score =  629 bits (325), Expect = 0.0
 Identities = 361/385 (93%), Gaps = 20/385 (5%)
 Strand = Plus / Plus

                                                                       
Query: 1   aatgattaactgggaactctgaaagattccgaggaaagttgtggcattttatttttattt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 183 aatgattaactgggaactctgaaagattccgaggaaagttgtggcattttatttttattt 242

                                                                       
Query: 61  tatttcaattttttgcaggcattcaaatgagtgaagagtcctatgcaaaaagactgtctt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 243 tatttcaattttttgcaggcattcaaatgagtgaagagtcctatgcaaaaagactgtctt 302

                                                                       
Query: 121 tcagaattgtaggtccaaatttatgtaaatagaattctagagcctgtgctgaacttccca 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 303 tcagaattgtaggtccaaatttatgtaaatagaattctagagcctgtgctgaacttccca 362

                                                                       
Query: 181 agggagaagaataataaatgtcctctgttcttagagcatgacattcacatgttattatta 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 363 agggagaagaataataaatgtcctctgttcttagagcatgacattcacatgttattatta 422

                                                                       
Query: 241 ttatta------------ttt--------gtgggtctttcttcaaacctatttttacaag 280
           ||||||            |||        |||||||||||||||||||||||||||||||
Sbjct: 423 ttattactattattattattttttttactgtgggtctttcttcaaacctatttttacaag 482

                                                                       
Query: 281 actaaggtacattatttcacacaatgtccttaagtgattttcgtatgtatttgtgctctg 340
           ||||||| ||||||||||| ||||||||| ||||||||||||||||||||||||||||||
Sbjct: 483 actaagggacattatttcatacaatgtccataagtgattttcgtatgtatttgtgctctg 542

                                    
Query: 341 tgcatgcatgtaccagcatccctgt 365
           |||||| ||||||||||||||||||
Sbjct: 543 tgcatgtatgtaccagcatccctgt 567


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 365
Length of database: 767
Length adjustment: 9
Effective length of query: 356
Effective length of database: 758
Effective search space:   269848
Effective search space used:   269848
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)