BAC Information

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BAC

Clone NameMSMg01-472M08
Chromosome19 (Build37)
Map Location 45,741,775 - 45,886,003
singlet/doubletdoublet
Overlap geneFgf8, Npm3, Mgea5, E330018D03Rik, Kcnip2
Upstream genePax2, LOC383450, LOC100042752, 6030443O07Rik, Sema4g, Mrpl43, Peo1, Lzts2, Pdzd7, EG435601, LOC100042760, Sfxn3, Kazald1, Tlx1, Lbx1, Btrc, EG627889, Poll, 5330431N19Rik, Fbxw4
Downstream gene9130011E15Rik, EG627939, 4930505N22Rik, Hps6, Ldb1, Pprc1, Nolc1, Elovl3, Pitx3, Gbf1, LOC668094, Nfkb2, Psd, Fbxl15, Cuedc2, 2310034G01Rik, Tmem180, Actr1a, Sufu, Trim8, Arl3, Sfxn2, D19Wsu162e, Cyp17a1, EG629359, 2010012O05Rik, As3mt, Cnnm2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-472M08.T7 (MSMg01no472_m08.b1)MSMg01-472M08.TJ (MSMg01no472_m08.g1)
ACCAG555226AG555227
length755768
length of high quality
(start - end)
456 (70 - 525)391 (81 - 471)
definitionCHROMAT_FILE: MSMg01no472_m08.b1 PHD_FILE: MSMg01no472_m08.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:50:31 2005CHROMAT_FILE: MSMg01no472_m08.g1 PHD_FILE: MSMg01no472_m08.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:50:31 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(45,741,775 - 45,742,230)(45,885,613 - 45,886,003)
sequence
NCCTTCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXC
GCGGAATTCCAATTATCCTACAGATCTTAGCCCTCTAAGAGATAGATATA
GCACAAGTCCTGACTCCTGAGGTAGGTACACACTGACTTCCTTCCACAAG
CACTGCCTCAGCCCGGAGATGAAGGTCACATCAATAGAGACAAGTCAGGT
TAACCGTGAGCAACCTCAAGACAAGGAGGAGCACAGCATAGGTCGGTGGA
AGTGTTTGCATAAGCCTAAGGCCTGGGCCCAGTCACCAGCATTGCAGAGG
AAAAGGAAAAACAGATAGTATTTGCCTTGGTGTGTGACAATGCGGCCTCG
CCTCTGTAGCCCTCCTCTTCAGATTTGACATCCAGTAATGAAGAAACACC
ACACAGCTCCCAACTGAGGAACACTCTACAGCGTATCTAGCCAGTACCCT
ATCCCTCAATGTCAAGATTATGAGAAATAAGGACACTCTCGGAGACTATA
ACAGCCAAGAAGGATCAAAAGAAACACCATGGAATAAATACCATAGGATA
TTCCAGACAGGCTTCTGAAAAAAAGAGGTAAAGACGGGGTTAAAAACTAA
GGAAATTTGGCCAACCCCCTAGGTACACAGTATTATAATCCCAGCCCTCC
TAAGGTTGAAGGCTGAAGAATCCCGACTGTTGGGACAACCCCTATTTTAA
CGTTTTTTAACTACTAAGAGATATACCCCCGTGTACAGAGTCTTGTTTTT
TCTTG
NCCTCGATGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTCCCCTCATCCTGGCTTCAA
AGAAACTGAAACAACGTGGCCCCATGGCATTCCGGGATCTGTAGTTCTCT
GCCTCATTACATGGGCTTCACCTGAGCCCCTGCGGTATGTTCAGGGCCTA
TGGCTGCTTCACGCCATGTGCCTTCAGAAGGAGGACTATTGGGGCTGAAT
GAGAGCCATGCTTACAGGTCTCTTGGGGAGCGTGTATCCCCTCAAGCCCC
CTGCTTGGGCTTGTCTCCTTTGTCAGATGGATGGAGCCAGGCGGGGCCAG
CTCTCAATCACTGCAGGCTTGACTTCCAGGACCCAAAATAGCCCCAACGC
CTAGGGAGGTCATTAATCACCTGATGCAGCTGGGGGCTGCAGGATCTTCT
TGATTGGCTGGGGATGGAATGGTCTGGCGGGCGCCTCCTCTTTTATTTCT
CCTCCCTCAGTTTTCTCTCTCTCTTTTTTTACTCTTACTCCCCTCTTCAT
ATATCCCTACCACTTCCTTTATTTTCTTTACTTTTTTTTTTTATTCTCCC
ACTCCCTCCGCATTTTTTCTTTTTTTTCTTCTTTCTCTCTATTTTCTTCT
TCTTCCTTTCTTTCTTTTTCCTTTCCCCCATCCTACTTATCTTCCCCTTA
CCTTTCTAGTATATCCCCTTTTCATTCTCTTATCTCCCACCCTCCCCCCT
ACTCTTTCTTTCTTTTTN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no472_m08.b1 MSMg01no472_m08.b1 CHROMAT_FILE:
MSMg01no472_m08.b1 PHD_FILE: MSMg01no472_m08.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:50:31 2005
         (456 letters)



>mm_chr19_45741575_45742430
          Length = 856

 Score =  851 bits (440), Expect = 0.0
 Identities = 452/456 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   acagatcttagccctctaagagatagatatagcacaagtcctgactcctgaggtaggtac 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 acagatcttagccctctaagagatagatatagcacaagtcctgactcctgaggtaggtac 260

                                                                       
Query: 61  acactgacttccttccacaagcactgcctcagcccggagatgaaggtcacatcaatagag 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 acactgacttccttccacaagcactgcctcagcccggagatgaaggtcacatcaatagag 320

                                                                       
Query: 121 acaagtcaggttaaccgtgagcaacctcaagacaaggaggagcacagcataggtcggtgg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 acaagtcaggttaaccgtgagcaacctcaagacaaggaggagcacagcataggtcggtgg 380

                                                                       
Query: 181 aagtgtttgcataagcctaaggcctgggcccagtcaccagcattgcagaggaaaaggaaa 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 aagtgtttgcataagcctaaggcctgggcccagtcaccagcattgcagaggaaaaggaaa 440

                                                                       
Query: 241 aacagatagtatttgccttggtgtgtgacaatgcggcctcgcctctgtagccctcctctt 300
           |||||||||||  |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 aacagatagtaggtgccttggtgtgtgacaatgcggcctcgcctctgtagccctcctctt 500

                                                                       
Query: 301 cagatttgacatccagtaatgaagaaacaccacacagctcccaactgaggaacactctac 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 cagatttgacatccagtaatgaagaaacaccacacagctcccaactgaggaacactctac 560

                                                                       
Query: 361 agcgtatctagccagtaccctatccctcaatgtcaagattatgagaaataaggacactct 420
           || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 agggtatctagccagtaccctatccctcaatgtcaagattatgagaaataaggacactct 620

                                               
Query: 421 cggagactataacagccaagaaggatcaaaagaaac 456
           ||||||||||||||||||||| ||||||||||||||
Sbjct: 621 cggagactataacagccaagagggatcaaaagaaac 656


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 456
Length of database: 856
Length adjustment: 10
Effective length of query: 446
Effective length of database: 846
Effective search space:   377316
Effective search space used:   377316
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
Query= MSMg01no472_m08.g1 MSMg01no472_m08.g1 CHROMAT_FILE:
MSMg01no472_m08.g1 PHD_FILE: MSMg01no472_m08.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:50:31 2005
         (391 letters)



>mm_chr19_45885413_45886203
          Length = 791

 Score =  717 bits (371), Expect = 0.0
 Identities = 386/391 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   tcccctcatcctggcttcaaagaaactgaaacaacgtggccccatggcattccgggatct 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 591 tcccctcatcctggcttcaaagaaactgaaacaacgtggccccatggcattccgggatct 532

                                                                       
Query: 61  gtagttctctgcctcattacatgggcttcacctgagcccctgcggtatgttcagggccta 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 531 gtagttctctgcctcattacatgggcttcacctgagcccctgcggtatgttcagggccta 472

                                                                       
Query: 121 tggctgcttcacgccatgtgccttcagaaggaggactattggggctgaatgagagccatg 180
           ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 471 tggctgcttcacgccatgtgccttcagaaggaggactgttggggctgaatgagagccatg 412

                                                                       
Query: 181 cttacaggtctcttggggagcgtgtatcccctcaagccccctgcttgggcttgtctcctt 240
           ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||  
Sbjct: 411 cttacaggtctcttggggagcatgtatcccctcaagccccctgcttgggcttgtctccgg 352

                                                                       
Query: 241 tgtcagatggatggagccaggcggggccagctctcaatcactgcaggcttgacttccagg 300
           || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 351 tgacagatggatggagccaggcggggccagctctcaatcactgcaggcttgacttccagg 292

                                                                       
Query: 301 acccaaaatagccccaacgcctagggaggtcattaatcacctgatgcagctgggggctgc 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 291 acccaaaatagccccaacgcctagggaggtcattaatcacctgatgcagctgggggctgc 232

                                          
Query: 361 aggatcttcttgattggctggggatggaatg 391
           |||||||||||||||||||||||||||||||
Sbjct: 231 aggatcttcttgattggctggggatggaatg 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 391
Length of database: 791
Length adjustment: 9
Effective length of query: 382
Effective length of database: 782
Effective search space:   298724
Effective search space used:   298724
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)