Query= MSMg01no473_j07.b1 MSMg01no473_j07.b1 CHROMAT_FILE:
MSMg01no473_j07.b1 PHD_FILE: MSMg01no473_j07.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:51:43 2005
(534 letters)
>mm_chr19_60385963_60386897
Length = 935
Score = 984 bits (509), Expect = 0.0
Identities = 528/540 (97%), Gaps = 11/540 (2%)
Strand = Plus / Minus
Query: 1 ggcaggcgaggtaacaaaatctagctgggttaagcttgcactgcctaggtaagaggcagc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 735 ggcaggcgaggtaacaaaatctagctgggttaagcttgcactgcctaggtaagaggcagc 676
Query: 61 tatgagctcttcaaaaccacaggctgaagatgctggattgcaggcccaggaaagaataat 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 675 tatgagctcttcaaaaccacaggctgaagatgctggattgcaggcccaggaaagaataat 616
Query: 121 aaaaattcctctttgcactagaagaaaagtaggcaagaaagagttcttgacagaaggact 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 615 aaaaattcctctttgcactagaagaaaagtaggcaagaaagagttcttgacagaaggact 556
Query: 181 cgacgcttctctgtcaaagtttggatcttgagtgtatgagggaacttggggctgaagtgt 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 555 cgacgcttctctgtcaaagtttggatcttgagtgtatgagggaacttggggctgaagtgt 496
Query: 241 taaatgtgaaatg-----ttttttgtttcttccctggagttttggcaaagaccattttca 295
||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 495 taaatgtgaaatgggaac-----tgtttcttccctggagttttggcaaagaccattttca 441
Query: 296 tttaaaaaaatgaacagggatgagcagaaagcaggggagaggatcaaaccagtaagaaat 355
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 440 tttaaaaaaatgaacagggatgagcagaaagcaggggagaggatcaaaccagtaagaaat 381
Query: 356 cagtgtttcaatgggagggacccagggggaagttgaaactcttcagcaataatctgaagt 415
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 380 cagtgtttcaatgggagggacccagggggaagttgaaactcttcagcaataatctgaagt 321
Query: 416 tattttgaaagaaattttatttttaatttgttttgtcattattttcaccctggnagtagt 475
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 320 tattttgaaagaaattttatttttaatttgttttgtcattattttcaccctggtagtagt 261
Query: 476 aagatcaagttagttactgaatctcatccttctctgtga-ttttttttttttttttggat 534
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 260 aagatcaagttagttactgaatctcatccttctctgtgatttttttttttttttttggat 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 33
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 534
Length of database: 935
Length adjustment: 10
Effective length of query: 524
Effective length of database: 925
Effective search space: 484700
Effective search space used: 484700
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no473_j07.g1 MSMg01no473_j07.g1 CHROMAT_FILE:
MSMg01no473_j07.g1 PHD_FILE: MSMg01no473_j07.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:51:43 2005
(271 letters)
>mm_chr19_60180205_60180875
Length = 671
Score = 524 bits (271), Expect = e-153
Identities = 271/271 (100%)
Strand = Plus / Plus
Query: 1 gtaagaaaccctgtggctcctgaggaattctgagattgaactctgacctcagcaaacatg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 gtaagaaaccctgtggctcctgaggaattctgagattgaactctgacctcagcaaacatg 260
Query: 61 tgcatgcacacacatatgtgaacccacatacaaacaaggatgaacacacagagagacaca 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tgcatgcacacacatatgtgaacccacatacaaacaaggatgaacacacagagagacaca 320
Query: 121 tacaaaagcagaacaaaggtctcagtgaacattgcttggtagataaccaggaccacagca 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tacaaaagcagaacaaaggtctcagtgaacattgcttggtagataaccaggaccacagca 380
Query: 181 tgtttagtgtaaaagccactaaaggaaacttactgggaggccattgcaaggaacctatga 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tgtttagtgtaaaagccactaaaggaaacttactgggaggccattgcaaggaacctatga 440
Query: 241 cttgcattctgggtgacaggctctctccagt 271
|||||||||||||||||||||||||||||||
Sbjct: 441 cttgcattctgggtgacaggctctctccagt 471
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 271
Length of database: 671
Length adjustment: 9
Effective length of query: 262
Effective length of database: 662
Effective search space: 173444
Effective search space used: 173444
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
