BAC Information

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BAC

Clone NameMSMg01-475C09
Chromosome19 (Build37)
Map Location 57,170,284 - 57,170,519
singlet/doubletsinglet
Overlap geneAblim1
Upstream geneHabp2, Nrap, Casp7, 9930023K05Rik, Dclre1a, Nhlrc2, Adrb1, EG629643, A630007B06Rik, 1700010L13Rik, Tdrd1, Vwa2, Afap1l2
Downstream geneEG668259, AI450540, Trub1, LOC100043038, Atrnl1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-475C09.T7 (MSMg01no475_c09.b1)MSMg01-475C09.TJ (MSMg01no475_c09.g1)
ACCAG557043AG557044
length770906
length of high quality
(start - end)
237 (78 - 314)---
definitionCHROMAT_FILE: MSMg01no475_c09.b1 PHD_FILE: MSMg01no475_c09.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:53:49 2005CHROMAT_FILE: MSMg01no475_c09.g1 PHD_FILE: MSMg01no475_c09.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:53:49 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
GCTACTCATAATTGCGGTGCTTAATAGATCACTATTCCAAGAGAGAGCCG
CGGATTCCAGACTTGTCTTCAATGCGACATACACAGCAGAAGGAAGAAGT
GCTAGGCCACGGGGTGATGCTATCAAACTGTTGTCCAAAGTGGGTTTGCT
TTCTATTACCATTTTAATCCAAGAGGAATTTGGGGGAATTAAGGAAGAAG
AATCATATTAGGAGTACTTTGCCAAATGGTTCCCCAAAGTGTTTTTCTAA
CCTCTGTGGAGTGAGTGATTTTTTTTTAATGAAACTGTCTCTCAGTAAAA
TCACTGGTTTAATCCCATTAGGTACCTTTTATCCTAGGACCTGCAGCCTG
CCACAAGGCCAGCTTCTATTCCCCTTCACCCTCCTCCTGCTGCTAGCATC
TTGTGAGCTAGATGACACGCAAATACCTCCCATTCCTAATTTCTAAAGTG
ACTTGAAATGATCAGGCAGGCATCCGTACTACTGCCTGTATTACCTTGTA
CCAGTGTCTGCTATGTATAGCCGTAGAATTGTCTTCCAATTTTTGATACT
GCCCTCTATTCGCCATGGTAACACGCCGCCGCCTGTTATCTTCTGACAAC
CTATGTATTTCCTTTTCTCCTTCCCCTTTCTGATATTGATTGACCCTCTC
CCCATCTTTCCCTTATATTTCCCTCTTATTGTGCCGTTTAATTTTATTCT
ATTCCCCTCCCCTTTTCTCCCCCATCCTTTCCCTCCCCATTTATTTCCAC
TCTTTTCTTTCTCTTTCCAA
CCTTTCCCGAATATAAGTGTAGCCTGGGGGGCGCCTGGTTTCTAAACATT
AGGNGACANNAAAGATTGTCCAGAAGCAAATCTCTGCAAATAGCCATAGA
TGCCAAGGGTTATGGGGGGATAGTTCATTCAAACCCCCTTAAAGGCAAAT
TCTATAGCCCAGGCTTCCGGTCTCAGCCTCTTCTCTACCTACCATCCCCA
GGGCTGGGGTTCATAGGGGAATGTTACCAAGGCCTGGCGCCCTGGTTTCC
TCTCCTTTTTTCCCCCCCAATTTCATTTCCCTTTCTTCCTCTTTAAAGTA
TTCTGAAAGTCGACATTCAGGTCTATCATATTTTTTTTTATCAGACCAAC
GTGGCACTATAATTAATAATCTAATTTTAATTCGTATCCCCTCTTCCTTA
ATGGCTCCTGCTTTCATTACGATGTATTGTTATAATGGTTAGCCCCAACT
TAATCCGTGCCCTTTATATCTTATATAGACGCACTTATATTTTATTGTGT
ATATACAAATTTCCATACGTCTTTTCTTCCTATATCCTCGGCATGATTAG
GGTTTCTATGGTTAGACTATATCCATCTCATTTTACTTTGATTCTTCGTC
AACTGCGTATCGCCTCGGTTTTCATAGGCATAATGAGTAGCCGTTTTCGC
CTCCCTTTTTCGCATTTTCTCTTTTCACTTCCCTGTCCCTCTTTCTTTTC
GGATGTTGTTTGCCATTCAACATTCTCACCATTTTTTTCTCCTCCTTTTA
AACCTGTCTTTCCTCTTCCTTATCCTCCCTCACCTGCTCTCTCTTTACAA
CTTTGTCTTTTTCACTAAACTCGTCAACTCTTCGCCCTTACCACACTTCT
TTCTCCTCCTCCATCATCCGTATCGCTTTCCCTTTACATTCCTCTATCCC
CGCCCG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no475_c09.b1 MSMg01no475_c09.b1 CHROMAT_FILE:
MSMg01no475_c09.b1 PHD_FILE: MSMg01no475_c09.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:53:49 2005
         (237 letters)



>mm_chr19_57170084_57170719
          Length = 636

 Score =  420 bits (217), Expect = e-122
 Identities = 232/237 (97%), Gaps = 1/237 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   catacacagcagaaggaagaagtgctaggccacggggtgatgctatcaaactgttgtcca 60
           |||||||||||||||||||||||||||||||| ||||||||||  |||||||||||||||
Sbjct: 201 catacacagcagaaggaagaagtgctaggccatggggtgatgccgtcaaactgttgtcca 260

                                                                       
Query: 61  aagtgggtttgctttctattaccattttaatccaagaggaatttgggggaattaaggaag 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 aagtgggtttgctttctattaccattttaatccaagaggaatttgggggaattaaggaag 320

                                                                       
Query: 121 aagaatcatattaggagtactttgccaaatggttccccaaagtgtttttctaacctctgt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 aagaatcatattaggagtactttgccaaatggttccccaaagtgtttttctaacctctgt 380

                                                                    
Query: 181 ggagtgagtgatttttttttaatgaaactgtctctcagtaaaatcactggtttaatc 237
           ||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||
Sbjct: 381 ggagtgagtgattttttttta-tgaaattgtctctcagtaaaatcactggtttaatc 436


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 237
Length of database: 636
Length adjustment: 9
Effective length of query: 228
Effective length of database: 627
Effective search space:   142956
Effective search space used:   142956
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)