AXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCGGATCCGCGGAAT
TCCTAACCTAGTGACTGACATACCTACTAGGAAATATATTAAACTAAATC
ATAGAAAAAACTTCCTAACATAAAGAATGACATTTCTTGTGCAAAGGCAC
AAGAAGCTTACAGAATGCCAAACAGGCACATAATAATCAAAACACTAAAC
TTATAGAACAACAACATCAAAAAAGAATATTAAAAGCTGAAATGGGAAAA
GGCAAAGTAACATATGAAGGCAGACTTCCTAGAATTTCACATAACTTCTT
AATAGTCACTCTAAAAGCCAGAAGGGCCTGGGCAGATATCTTACAGACTC
TGTTTGACAGTCCAGACTACTAAACCTAGTATAACTTTCAATCACCATAG
TTGAAGAAAGCAAGATATTTCATGATAAAGTAAAATTTAAACATATTTAT
CTACAAATCCAGCCCCACAGAAAACACTGGAAGGAAAACTCTAAACCAAA
GAGGTTAACCACACCCATGAAAACATGGGCAATAAATAAACTCACAACTG
CAAAATTATTAATGCACAACACACACACACACACACACACACACACACAC
ACACACACACAAAGCCACTACAAAATAACAGTAATTAAAAATCACTGATC
ATTATATCTCCCAACATCAATTGACTCAATTACCCAACAAAATGGAACAG
GCTAACAGAATGGATATGAAAACAGGATCCATGCTGCTGCATAAACATAC
CTCAAN

AATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXAACCACAGGACTTTTATATATCCCTCTTA
GAAAGAGTAGATGGAGCTTCTCTTTAAGGCTTTTTGGTCTATGGGTATGA
TTCTCGCTTAGGGTCTGAGAGGTCCTGGGTTCAAATCTTGGAACAATCCT
ATTATTTTGCCAATCAAACCATGAGAATTAGAAGTCAACCGTGGCTGCTT
AGAAGGTAAGAATAAACAAATGAAAACAGAAGTCCGTAAGTACTCAAAGT
GAGTTTTTTGTTGGTTTCTTTGGACCTTGTTTTCTTTTTGAGGCAGGGTC
TCCCTCATTTAGCTCAGGCTGGTCCTGACAAAGTCAAGGATAGCTGCGTT
TCTGATCTTCATGCCTTCACTTGTTGTGTCCTGGAAATATAGGCATGTGT
GTTAATCTGATGTTCAGGATGGAACCCAGGGTGAGGCAAGCAATTAGCTG
AGCTACAGCATCAGTTCATAACTCAAGATGTCCATCAAGAATGGCTGACA
TTATTCAAACTAATCTGATGAATTTAAAAATTGGAAAATGTTGGAATTAA
AAAAAATCAATCCAACTGCCCTGGCAAAGCAGGGAGAACTGAAGCAGGCT
TCTGAGATGCACCAGCTTCTAGTCAGCTTTTTAGTGTGTTTGAGATACCC
TGAGCTACATGAGAAGAAACACAGTTAGAGAAAACAGGGTTGTGGGACAA
TCTGCAAGACATCTGGCTTGCTAATAAAT

Query= MSMg01no477_m18.g1 MSMg01no477_m18.g1 CHROMAT_FILE:
MSMg01no477_m18.g1 PHD_FILE: MSMg01no477_m18.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:57:20 2005
         (686 letters)



>mm_chr19_3066346_3067432
          Length = 1087

 Score =  731 bits (378), Expect = 0.0
 Identities = 613/722 (84%), Gaps = 57/722 (7%)
 Strand = Plus / Plus

                                                                       
Query: 17  tatatccctcttagaaagagtagatggagcttctctttaaggctttttggtctatgggta 76
           ||||||||||||||||||| ||| || |||||||||||||||||| |||||||| |||||
Sbjct: 171 tatatccctcttagaaagaatagctgtagcttctctttaaggcttgttggtctaggggta 230

                                                                       
Query: 77  tgattctcgcttagggtctgagaggtcctgggttcaaatcttggaac-aatcctattatt 135
           |||||||| |||| ||||||||| |||||||||||||| ||||| || | |||| || ||
Sbjct: 231 tgattctcacttaaggtctgagaagtcctgggttcaaagcttgg-acgagtcctcttctt 289

                                                                       
Query: 136 ttgccaatcaaaccatgagaattagaagtcaaccgtggctgcttagaaggtaagaataaa 195
           ||||| |||||||  ||||||||||||||||||| ||||| |||||||| ||||| ||||
Sbjct: 290 ttgccgatcaaactgtgagaattagaagtcaaccttggctacttagaagataagactaaa 349

                                                                       
Query: 196 caaatgaaaacagaagtccgtaagtactcaaagtg------------------------- 230
           ||||||||||  ||| |  ||||||||||||||||                         
Sbjct: 350 caaatgaaaatggaaatatgtaagtactcaaagtggctttttttgttttttgttttttgt 409

                                                                       
Query: 231 ------------------agttttttg---ttggtttctttggaccttgttttctttttg 269
                              ||||||||   ||||||| ||||||||||||||||| ||||
Sbjct: 410 tttgtttttgtttttgtttgttttttgtcattggtttatttggaccttgttttctgtttg 469

                                                                       
Query: 270 aggcagggtctccctcatttagctcaggctggtcctgacaaagtcaaggatagctgcgtt 329
           |||||||||||  |||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 470 aggcagggtctagctcatttagctcaggctggtcctgacaaagtcaaggatagctgcatt 529

                                                                       
Query: 330 tctgatcttcatgccttcacttgttgtgtcctggaaatataggcatgtgtgttaat-ctg 388
            ||||||||||||||||||||| || ||||||||||||||| |||||||| ||||| | |
Sbjct: 530 cctgatcttcatgccttcacttcttctgtcctggaaatatatgcatgtgtattaatccag 589

                                                                       
Query: 389 atgttcaggatggaacccagggtgaggcaagcaattagctgagctacagcatcagttcat 448
            |||||||| |||| |||||||| ||||||||||||||||||||||||||||||| ||||
Sbjct: 590 -tgttcaggttggagcccagggttaggcaagcaattagctgagctacagcatcagctcat 648

                                                                       
Query: 449 aactc-aagatgtccatcaagaatggctgacattattcaaactaatctgatgaatttaaa 507
           ||||| || |||||||||||||||||||| ||||||||||||||| |||||| |  ||||
Sbjct: 649 aactcgaa-atgtccatcaagaatggctggcattattcaaactaacctgatgga--taaa 705

                                                                       
Query: 508 aat--tggaaaatgttggaatt-aaaaaaaatcaatccaactgccctggcaaagcaggga 564
           |||  |||||||| |||||||| |||||||||||||||| ||||||||||||||||||||
Sbjct: 706 aataatggaaaatattggaattaaaaaaaaatcaatccagctgccctggcaaagcaggga 765

                                                                       
Query: 565 gaactgaagcaggcttctgagatgcaccagcttctagtcagctttttagtgtgtttgaga 624
           | | |||||||||| |||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 766 gcattgaagcaggcatctgagatccaccagcttctagtcagctttttagtgtgtttgaga 825

                                                                       
Query: 625 taccctgagctacatgagaagaaacacagttagagaaaacagggttgtgggacaatctgc 684
           ||| |||||||||||||||||||||||| |||||||||||||||||||| ||||||||||
Sbjct: 826 tacgctgagctacatgagaagaaacacaattagagaaaacagggttgtgagacaatctgc 885

             
Query: 685 aa 686
           ||
Sbjct: 886 aa 887


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 686
Length of database: 1087
Length adjustment: 10
Effective length of query: 676
Effective length of database: 1077
Effective search space:   728052
Effective search space used:   728052
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)