BAC Information

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BAC

Clone NameMSMg01-478F14
Chromosome19 (Build37)
Map Location 19,739,620 - 19,740,260
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100042193, 2410127L17Rik, LOC100042184, D030056L22Rik, Trpm6, Rorb
Downstream geneLOC100042218, LOC100041541, Anxa1, LOC100041560, 1500015L24Rik, E030003E18Rik, EG626549, Aldh1a1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-478F14.T7 (MSMg01no478_f14.b1)MSMg01-478F14.TJ (MSMg01no478_f14.g1)
ACCAG559486AG559487
length749753
length of high quality
(start - end)
633 (60 - 692)641 (63 - 703)
definitionCHROMAT_FILE: MSMg01no478_f14.b1 PHD_FILE: MSMg01no478_f14.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:58:03 2005CHROMAT_FILE: MSMg01no478_f14.g1 PHD_FILE: MSMg01no478_f14.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:58:03 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXTCCAAGAGGATCCGCGGAATTCATTACC
TTCGATCTGTACAGAGCTAAAGAAAGAATTCCCAACTGAGGAATATCAAA
TGGCCAAGAAGCACCTAGAGAAATGTTCAATATTCTTAGTCATCAGGGAA
ATGCAAATCAAAACAACCCTAAGGTTCCAACTCACACTGGTCAGAATGGC
TAAGATCAAATCTCAGGTGACAGCAGATGCTGGCAAGAATATGGAGAAAG
AGGAACACTCTTTCATTGTTGGTGGGATTGCAAGCTAGTACAACCACTCT
GGAAATCATTCTGGCAGTTCCTCGGAAAATGGGACATAGTACTACCTGAG
AACCCAGCTATACCACTCTTGAGCATATACCTAAAAGACATTCCAACATC
TAACAAGAACGCATGCTCCACTATGTTTATAACAGACTTATTTATGATAG
CCAGAAGTTGGAAAGAACCCAGATGTCCTTCAACAGAGGAATGGATGCAG
AAAATGTGGTACATTCACACAATGGAGTACTACTCAGCTATTAAAAACAA
TGACTACATGAAATTCGCAGGCACATGAATGGAACTAGAAAGTATCCTGA
GTGAGGTGAACCAGTCACATAAGAACACAAATGAGTGAACACAAGTGAGG
TAAACCAGTTACAAAAGAACACTTCTTACCACTGATAAGTGGATATTAGT
CCCAAAGCCATGAATAATATAATTTACAGACCACATGAAGCTCTAGAAG
GGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXATGATGTTGAAGGGAGGTAGTCTGACCTTGAGGAAGAC
TCCAGATACCTGTTTTTCAAAGAAAGTCCATTCAGTTGTAGGAGCCAGAA
CTGAAGCAAAGGAGTAGCAGAGTTCAAGGTAGAAAAATAAAGTTAAGAAA
AGCAATGCAATAGTAACATCCAGGCTAATGCAAAGCAGAGCTGCCCTCCT
TGCGTAGAAGTCAATTTAATTTTGGTGACAGAGTTGGGATATGCAATGTC
CTCCAAAGACTCATGCATTAGCAGCTGTTAGAGCTATTTGAAGAGGTGGA
AAACTTTAAAGTAGGATTATTGGAGGAAGCAGTTGATAATGTGCCTCCCA
TAGGCTACAACAGACCCAAGAAACATTTCCTCTCATCCTCCACTTCTTGA
AGTGAGTAGCTTTTCTTCCCTGTACCTTTTACAAGATTCCTGTCTTTACT
GAGGTCTAAAAAGGTAGAGGAGCCAGATGATCAAGTGCTGAAACTTTTAA
AACTGTGAATCAAAATACATATTACTTCCCATAAGTTTTGTACAGTATAT
TGTTACAAGAAACAGAGATGATAAATACAACTAACAATTAAAGAAGCAGT
AAAGCAGGTGGGTTCCATTTCCTTCTGTGTCTCCCATTTTCCATGGAAGA
GATCCCAAATCATAGTAGGAATCACTACTATAATATGACCTTCTCTTACA
TCT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no478_f14.g1 MSMg01no478_f14.g1 CHROMAT_FILE:
MSMg01no478_f14.g1 PHD_FILE: MSMg01no478_f14.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:58:03 2005
         (641 letters)



>mm_chr19_19739420_19740460
          Length = 1041

 Score = 1156 bits (598), Expect = 0.0
 Identities = 631/642 (98%), Gaps = 2/642 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   atgatgttgaagggaggtagtctgaccttgaggaagactccagatacctgtttttcaaag 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 atgatgttgaagggaggtagtctgaccttgaggaagactccagatacctgtttttcaaag 260

                                                                       
Query: 61  aaagtccattcagttgtaggagccagaactgaagcaaaggagtagcagagttcaaggtag 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 aaagtccattcagttgtaggagccagaactgaagcaaaggagtagcagagttcaaggtag 320

                                                                       
Query: 121 aaaaataaagttaagaaaagcaatgcaatagtaacatccaggctaatgcaaagcagagct 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 aaaaataaagttaagaaaagcaatgcaatagtaacatccaggctaatgcaaagcagagct 380

                                                                       
Query: 181 gccctccttgcgtagaagtcaatttaattttggtgacagagttgggatatgcaatgtcct 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gccctccttgcgtagaagtcaatttaattttggtgacagagttgggatatgcaatgtcct 440

                                                                       
Query: 241 ccaaagactcatgcattagcagctgttagagctatttgaagaggtggaaaactttaaagt 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ccaaagactcatgcattagcagctgttagagctatttgaagaggtggaaaactttaaagt 500

                                                                       
Query: 301 aggattattggaggaagcagttgataatgtgcctcccataggctacaacagacccaagaa 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 aggattattggaggaagcagttgataatgtgcctcccataggctacaacagacccaagaa 560

                                                                       
Query: 361 acatttcctctcatcctccacttcttgaagtgagtagcttttcttccctgtacctttt-a 419
           |||||| |||||||||||||||||||||||||||||||||||||||||| |||||||| |
Sbjct: 561 acattttctctcatcctccacttcttgaagtgagtagcttttcttccctataccttttta 620

                                                                       
Query: 420 caagattcctgtctttactgaggtctaaaaaggtagaggagccagatgatcaagtgctga 479
           |||||||||||||||||| |||||||||||||||||||||| |||||||||| |||||||
Sbjct: 621 caagattcctgtctttaccgaggtctaaaaaggtagaggagtcagatgatcatgtgctga 680

                                                                       
Query: 480 aacttttaaaactgtgaatcaaaatacatattacttcccataagttttgtacagtatatt 539
           || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 aagttttaaaactgtgaatcaaaatacatattacttcccataagttttgtacagtatatt 740

                                                                       
Query: 540 gttacaagaaacagagatgataaatacaactaacaattaaagaagcagtaaagcaggtgg 599
           ||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 741 gttacaagaaatagagatgataaacacaactaacaattaaagaagcagtaaagcaggtgg 800

                                                     
Query: 600 gttccatttccttctgtgtctcccattttccatggaagagat 641
            ||||||||||| |||||||||||||||||||||||||||||
Sbjct: 801 tttccatttcct-ctgtgtctcccattttccatggaagagat 841


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 641
Length of database: 1041
Length adjustment: 10
Effective length of query: 631
Effective length of database: 1031
Effective search space:   650561
Effective search space used:   650561
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)