BAC Information

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BAC

Clone NameMSMg01-480J12
Chromosome19 (Build37)
Map Location 16,042,228 - 16,248,301
singlet/doubletdoublet
Overlap geneCep78, LOC100042048, Gnaq, E030024N20Rik
Upstream geneEG635497, Pomc-ps1, LOC667482, Psat1, LOC100041424
Downstream geneLOC624438, Gna14, LOC666665, Vps13a, Foxb2, A230083H22Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-480J12.T7 (MSMg01no480_j12.b1)MSMg01-480J12.TJ (MSMg01no480_j12.g1)
ACCAG561198AG561199
length725726
length of high quality
(start - end)
592 (71 - 662)278 (325 - 602)
definitionCHROMAT_FILE: MSMg01no480_j12.b1 PHD_FILE: MSMg01no480_j12.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:00:57 2005CHROMAT_FILE: MSMg01no480_j12.g1 PHD_FILE: MSMg01no480_j12.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:00:57 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(16,247,710 - 16,248,301)(16,042,228 - 16,042,505)
sequence
NACTATAATTTGGGCGCTAATAGACTACTATTTCGAGACAAGCGCGGAAT
TACCTGCTTACCAAACACGCAAGTCTTTCTCATGTGTTCATTTTCACTGC
CAAGCCATCCACAGAAGAAGCCCTGTAAGAACAGGACACTCTCAAAGTCA
GTGCTGGTCTGAATGATCCCACGAGACACAGCAAGGGTGGCCGTGGCAGT
TCTAAGAGCATCAAAGACAACTCCTGGCTGTGGAGTTTATCCTGGACAAC
TGCTCTGCTTGGGATCTTAAACTTTAAATTCTTATTAGCAAAATACATTT
TGCCTTTATAAAACTTGTTTATGTTGATTTTTAAAAGTAAACTTGAAGGT
TTGGTATGGGTGGTCAGTAGTAGAGCGCCTGCATTTGATAGGTACATTTC
ATATTTTAATATCTGGCTCTTGCCTATCGTTTAACAAACATCCGACACTC
CTCACTATTTGCTAACAGAGCCACCTCCTCAGGACACCCCACCTTCCCCC
CACACCTTCAGTAACAGCAGCCCGTTTTGGCTTAGATGAGATCTTCAGCT
ACTAAGGGCATTACTAAAAGTGCCGCTACCCTTTGGACACAATTCTAGAT
ATGAGATTCAAGCAAGGTCTCAGTACAGATTCGAGCTGGACTCAAGCACT
GGGCAGCCTAGGAGGAAAGTTTCCTTGCTCCTAGCAGAGAAACACCGAAG
AGAGAGGCCATCTGTCTCTGCTTTT
NCCGATGATGTGNGAGGCCTGGNGGNCGCCTGGTTTCATTACCGAGGTGA
ACNANAGAAGGTTTCGAAAACACGCTCTATAAATATCGTGAATTTTAATA
ATAATAAAAAAAAGCAGCTGTGCCATTTATCTTCAGGGGATGTGTAATGC
TTGCAACTGAACCTAAGGCCTTATATGCTGGCCAGGAAACTGGTTTGCCA
TTAAAGCTGTATCCCGTAGCTGTCTTTAAATAAAATAAATAAAATAGGTT
TTTGCCCTTCAAACATTAATGACGTTTTGAGAAGGCGCCATCTGGGAACT
AGAAATCTGGGCCCTAACTCATACAAACTAGCTGGACCTTACGTCCTTGC
TCTCATATATGTGACAATCAAATCTCTGCTGTTTTAAGCCAATAAGCAGA
CAAACAAACAAATAACAAATGGATAGCCAGTTCTAGATTTGTAAGTTCTG
TACCAAGACAGACCTAGTTTTAAGCACTCACTATGGGGTTGCTGGTGTGG
CTCAGTGATAGCATGCATGTTGAAGAGTATGAGGTTTTGAGTTCAACCCC
AGGTCCCACCAGCTTCCCGTAATTACATGTGTATCATGTAACCCACAAGA
AAAGGCAAGACTTTCCTAAAAGATCAGGTCTCCCAGAACTTATTACTAAT
CAACTCTGATTTTAAAGTCCAAATAAAACTTATGTTTACGGTAAAAAAAA
AAAAAAAATCTGCTAAGTAAGTTAAT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no480_j12.b1 MSMg01no480_j12.b1 CHROMAT_FILE:
MSMg01no480_j12.b1 PHD_FILE: MSMg01no480_j12.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:00:57 2005
         (592 letters)



>mm_chr19_16247510_16248501
          Length = 992

 Score = 1060 bits (548), Expect = 0.0
 Identities = 581/592 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   aagtctttctcatgtgttcattttcactgccaagccatccacagaagaagccctgtaaga 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 792 aagtctttctcatgtgttcattttcactgccaagccatccacagaagaagccctgtaaga 733

                                                                       
Query: 61  acaggacactctcaaagtcagtgctggtctgaatgatcccacgagacacagcaagggtgg 120
           |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 732 acaggacactctcaaagtcagtgctggtctgaatgatcccacgagacacagcgagggtgg 673

                                                                       
Query: 121 ccgtggcagttctaagagcatcaaagacaactcctggctgtggagtttatcctggacaac 180
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 672 ccgtggcagttctaagagcatcaaagacaactcctggctgtggagtttatcctggaaaac 613

                                                                       
Query: 181 tgctctgcttgggatcttaaactttaaattcttattagcaaaatacattttgcctttata 240
           ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 612 tgctctgcttgggatcttaaactttaaattcttattagcaaaatatattttgcctttata 553

                                                                       
Query: 241 aaacttgtttatgttgatttttaaaagtaaacttgaaggtttggtatgggtggtcagtag 300
           ||||| |  ||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 552 aaactagagtatgttgatttttaaaagtaaacttgaaggtttggtacgggtggtcagtag 493

                                                                       
Query: 301 tagagcgcctgcatttgataggtacatttcatattttaatatctggctcttgcctatcgt 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 492 tagagcgcctgcatttgataggtacatttcatattttaatatctggctcttgcctatcgt 433

                                                                       
Query: 361 ttaacaaacatccgacactcctcactatttgctaacagagccacctcctcaggacacccc 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 432 ttaacaaacatccgacactcctcactatttgctaacagagccacctcctcaggacacccc 373

                                                                       
Query: 421 accttccccccacaccttcagtaacagcagcccgttttggcttagatgagatcttcagct 480
           |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 372 accttccccccacaccttcagtaatagcagcccgttttggcttagatgagatcttcagct 313

                                                                       
Query: 481 actaagggcattactaaaagtgccgctaccctttggacacaattctagatatgagattca 540
           ||||||||||||||||||| ||| ||| ||||||||||||||||||||||||||||||||
Sbjct: 312 actaagggcattactaaaattgcagctcccctttggacacaattctagatatgagattca 253

                                                               
Query: 541 agcaaggtctcagtacagattcgagctggactcaagcactgggcagcctagg 592
           ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 252 agcaaggtctcagtacagattcgagctggactcaagcactgggcagcctagg 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 592
Length of database: 992
Length adjustment: 10
Effective length of query: 582
Effective length of database: 982
Effective search space:   571524
Effective search space used:   571524
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
Query= MSMg01no480_j12.g1 MSMg01no480_j12.g1 CHROMAT_FILE:
MSMg01no480_j12.g1 PHD_FILE: MSMg01no480_j12.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:00:57 2005
         (278 letters)



>mm_chr19_16042028_16042705
          Length = 678

 Score =  514 bits (266), Expect = e-150
 Identities = 275/278 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   aaactagctggaccttacgtccttgctctcatatatgtgacaatcaaatctctgctgttt 60
           ||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||
Sbjct: 201 aaactagctggaccttacgtccttgctctcagatatgtgaaaatcaaatctctgctgttt 260

                                                                       
Query: 61  taagccaataagcagacaaacaaacaaataacaaatggatagccagttctagatttgtaa 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 taagccaataagcagacaaacaaacaaataacaaatggatagccagttctagatttgtaa 320

                                                                       
Query: 121 gttctgtaccaagacagacctagttttaagcactcactatggggttgctggtgtggctca 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gttctgtaccaagacagacctagttttaagcactcactatggggttgctggtgtggctca 380

                                                                       
Query: 181 gtgatagcatgcatgttgaagagtatgaggttttgagttcaaccccaggtcccaccagct 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gtgatagcatgcatgttgaagagtatgaggttttgagttcaaccccaggtcccaccagct 440

                                                 
Query: 241 tcccgtaattacatgtgtatcatgtaacccacaagaaa 278
           ||||||||||||||||| ||||||||||||||||||||
Sbjct: 441 tcccgtaattacatgtgaatcatgtaacccacaagaaa 478


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 278
Length of database: 678
Length adjustment: 9
Effective length of query: 269
Effective length of database: 669
Effective search space:   179961
Effective search space used:   179961
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)