BAC Information

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BAC

Clone NameMSMg01-480O03
Chromosome19 (Build37)
Map Location 23,208,003 - 23,208,245
singlet/doubletsinglet
Overlap genenone
Upstream geneTrpm3, EG433230
Downstream geneKlf9, Smc5, Mamdc2, 1700028P14Rik, LOC670565, LOC226030, EG625193, Ptar1, Apba1, Gm967, 1700021P04Rik, Tjp2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-480O03.T7 (MSMg01no480_o03.b1)MSMg01-480O03.TJ (MSMg01no480_o03.g1)
ACCAG561418AG561419
length732740
length of high quality
(start - end)
241 (75 - 315)243 (75 - 317)
definitionCHROMAT_FILE: MSMg01no480_o03.b1 PHD_FILE: MSMg01no480_o03.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:01:20 2005CHROMAT_FILE: MSMg01no480_o03.g1 PHD_FILE: MSMg01no480_o03.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:01:20 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXTCCATATAGGGGGCGGAA
TTCTTTGTTTTGCTATAAACCCGATTTTTAATAGGGTTATTTGATTCTCT
GGAATCTAATTTCTTGAGTTCTTTCTATATGTTGAATATTAGCCCTCTAT
TGGAAGTAGGGTTGGTAAAGATCTTTTCCCAATCTGTTGGTTGATGTTTT
GTCTTATTGACAGTGTCCTTTGCCTTACAGAAGCTTTGCAATTTTATGAT
GTCCCATTTGTCTATTGTTGATCCTAAGATCAACAAGGCATTGGTGTTCT
GTTCAGGAAATTTTCTCTTGTGCCCATGTGTTCAAGACTCTTCCCCACTT
TCTCTTCTATTAGTTTCAGTGTCTCTGGCTTTATGTGGAGGTCCTTGATC
CACTTAGACCTGAGCTTTGTACGGGGAGATAAAAATGAATCAGTTTGCAG
TCTTCTACTAGTATACCTCCAGTTGAACCAGCACCATTTTTGAAGATGTC
TTTTTTCCACTGGAGGGTTTTAGCTCCTGTGTCAAAGATCAAGTGACCAT
AGGTGTGTGGGTTCATTTCTGGGTCTTCATTCTATTCCACTTATCTACCT
GCCTGTCTCAGTACCAATACCATACAGGTTTTATCACTATTGCTCTGTAA
TACAGCTTGAGGTCAGGGATGGTGATTTCCCCAGGTCTTTTATGGTGGAG
AAAGTTTTCGCTATCCTGGGTTTTTTTTTGAC
CACGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXAGCTTTTCCTTACAGTTAAGCTGAAT
GAACAAAGGGCCCCAAGGAAGACAAGAGGTTCCAGCTCTGTTTGCCGCCT
GTCTGAGGTTCACCCCATTTTAAAAACCACCTCTTCACCACCCTCTGCTC
ACTGCCATGGTTACCACCGCCCTGTCCTTGAGCGGCACTGGTTGTTCAAA
GGCAGAAACAACAAGGGCATTTTAAGTGTCCTTTTAAATATCCAAAACAC
TGTTGGCATTTAGGAAACTTATAAAGGGAAATAAAAGGTCTGGTTGTTTC
TCGTTTCCTTCCCAGCCCAGGACCCTGAATAAATCCTTTACCCTGGGTGG
CCTCTTAGCCCCCCAAGGAGAGGACGAAGTTTATGAGGCCTCTGGAGTGG
AATTTAGCACCTGTTAGCATTAGTGTTGTTCGCTGTGAGTTGCCTCTTCC
TTTCCCTCCCTCTGCAGCTTTAGACCTTGCCCCCAGGCTAAGCTAGCTCC
ACCCGGCGCCTTGTGAAAGTCTTCTGACTTTCCCTCACCTTCCCGCTCTG
ATAGTCCCACACACTTTAATCCCTAGCCTTCCCTCCCCAGCTGTTAACCC
TGTTTACCGGGGCTAGTATTTTCAGGGAGGCAATATTGGTCCATCTTAAT
ATTCTTCTATCCCTGAAAACACTTTCATTTTTTAATATTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no480_o03.g1 MSMg01no480_o03.g1 CHROMAT_FILE:
MSMg01no480_o03.g1 PHD_FILE: MSMg01no480_o03.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:01:20 2005
         (243 letters)



>mm_chr19_23207803_23208445
          Length = 643

 Score =  462 bits (239), Expect = e-135
 Identities = 242/243 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   agcttttccttacagttaagctgaatgaacaaagggccccaaggaagacaagaggttcca 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 443 agcttttccttacagttaagctgaatgaacaaagggccccaaggaagacaagaggttcca 384

                                                                       
Query: 61  gctctgtttgccgcctgtctgaggttcaccccattttaaaaaccacctcttcaccaccct 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 383 gctctgtttgccgcctgtctgaggttcaccccattttaaaaaccacctcttcaccaccct 324

                                                                       
Query: 121 ctgctcactgccatggttaccaccgccctgtccttgagcggcactggttgttcaaaggca 180
           |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 323 ctgctcactgccatggttaccaccgccctgtccttgagcggcactggtcgttcaaaggca 264

                                                                       
Query: 181 gaaacaacaagggcattttaagtgtccttttaaatatccaaaacactgttggcatttagg 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 263 gaaacaacaagggcattttaagtgtccttttaaatatccaaaacactgttggcatttagg 204

              
Query: 241 aaa 243
           |||
Sbjct: 203 aaa 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 243
Length of database: 643
Length adjustment: 9
Effective length of query: 234
Effective length of database: 634
Effective search space:   148356
Effective search space used:   148356
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)