BAC Information

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BAC

Clone NameMSMg01-481L10
Chromosome19 (Build37)
Map Location 60,386,363 - 60,558,735
singlet/doubletdoublet
Overlap genePrlhr
Upstream genePdzd8, LOC100034727, LOC100043073, Emx2os, Emx2, Rab11fip2, LOC100043087, LOC100043091, LOC100043093, D19Ertd737e, 4933412A08Rik
Downstream gene2700078E11Rik, Nanos1, Eif3s10, 1810055E12Rik, Sfxn4, Prdx3, Gprk5, LOC671322, BC029127, LOC100043112, EG547091, LOC433261, EG633057, Csf2ra, LOC100043120
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-481L10.T7 (MSMg01no481_l10.b1)MSMg01-481L10.TJ (MSMg01no481_l10.g1)
ACCAG562054AG562055
length766759
length of high quality
(start - end)		427 (328 - 754)632 (57 - 688)
definitionCHROMAT_FILE: MSMg01no481_l10.b1 PHD_FILE: MSMg01no481_l10.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:02:26 2005CHROMAT_FILE: MSMg01no481_l10.g1 PHD_FILE: MSMg01no481_l10.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:02:26 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(60,386,363 - 60,386,789)(60,558,332 - 60,558,735)
sequence
TTTGCGGCCGCTAAACGACGAGGAGAGGTTCCTTACCGCGGGAATTNAGA
GACCCGATTTCAATTCACGAGGGAGNAAAAGCATAGATAGTGACAATGGA
AAAACAGACATTTGTTCGTCGCTCACAGATCCAAAAAAAAAAAAAAAATC
ACAGAGAAGGATGAGATTCAGTAACTAACTTGATCTTACTACTACCAGGG
TGAAAATAATGACAAAACAAATTAAAAATAAAATTTCTTTCAAAATAACT
TCTTATTATTGCTGAAGAGTTTCAACTTCCCCCTGGGTCCCTCCCATTGA
AACACTGATTTCTTACTGGTCCGTCCTTCTCCCCTGCTTTCTGCTCATCC
CTGTTCATTTTTTTAAATGAAAATGGTCTTTGCCAAAACTCCAGGGAAGA
AACAGTTCCCATCCCACATTTAACACTTCAGCCCCAAGTTCCCTCATACA
CTCAAGATCCAAACTTTGACAGAGAAGCGTCGAGTCCTTCTGTCAAGAAC
TCTTTCTTGCCTACTTTTCTTCTAGTGCAAAGAGGAATTTTTATTATTCT
TTCCTGGGCCTGCAATCCAGCATCTTCAGCCTGTGGTTTTGAAGAGCTCA
TAGCTGCCTCTTACCTAGGCAGTGCAAGCTTAACCCAGCTAGATTTTGTT
ACCTCGCCTGCCCTCTGCTGGACAGAGGGAGGAATTCTTACCAAGCAGTT
CATACAGAGCCACAAGGTTTCCAAATATCCACAGATTTTCAAATAACAGA
CATTAAATTAACTATC

AGTGCGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXTTTCGCAATTCTCCTACTGTTCTTGGTTTTCTAAGACGAATAGC
AATTTAAGTTTTTGAAAGTATTTTTTGAGAATTTTATACTTGTGTACTAC
ATCCTTCCTACCCCTTCCTCTCTCCACTAACTCATCCCATGACCCCTACC
TTCCTCTCAAATCCATGACCCAGTCTTTAACGAATTTTGAAACATACACA
CACCCTACAAAACAAAACAAAACAAAACAAAACAACAAAGCAAAACACAA
AATTCTACAGAGTCCATTTAGTGTTTCTCACATCTAGATATAGGGCTGCC
CACTTGTGATTGGATAACCTAACAGGGAGCCATCCCTGAAGAAAACTGAC
TCTCCCTTCCTCAGCAACCATTGATTGCCTGTACTTCTTCATCTAGAGGT
GAGACCTTGTGATAAATTTCCCATCCACACTGAACAGTACTTTAAAAGAT
GAAAATGACTGAGGGTGTTCTCTGCCACTGGGGTGGGTGTGGCTGAGACA
TGAGTATTGAGTTGTGACCTGTAGTTCTTCCCTTCCGTTGTTGTGTGCTC
AGAGGCGTCTGAGTTTGTAGTTTGAATGGGTGGAAGAGACAAGTCATAAA
TGGGCGAGGCTCTATAAAGCTTGCCATATTTCCTAGGTGGTCATTAGTGT
CCCAAGAGCATCCTTCACACAGGTGTGAAGTCCTAGGGCACTTCTCTTTG
CTATTGAAA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no481_l10.b1 MSMg01no481_l10.b1 CHROMAT_FILE:
MSMg01no481_l10.b1 PHD_FILE: MSMg01no481_l10.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:02:26 2005
         (427 letters)



>mm_chr19_60386163_60386989
          Length = 827

 Score =  803 bits (415), Expect = 0.0
 Identities = 424/427 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   tctcccctgctttctgctcatccctgttcatttttttaaatgaaaatggtctttgccaaa 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tctcccctgctttctgctcatccctgttcatttttttaaatgaaaatggtctttgccaaa 260

                                                                       
Query: 61  actccagggaagaaacagttcccatcccacatttaacacttcagccccaagttccctcat 120
           |||||||||||||||||||||||||  |||||||||||||||||||||||||||||||||
Sbjct: 261 actccagggaagaaacagttcccatttcacatttaacacttcagccccaagttccctcat 320

                                                                       
Query: 121 acactcaagatccaaactttgacagagaagcgtcgagtccttctgtcaagaactctttct 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 acactcaagatccaaactttgacagagaagcgtcgagtccttctgtcaagaactctttct 380

                                                                       
Query: 181 tgcctacttttcttctagtgcaaagaggaatttttattattctttcctgggcctgcaatc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tgcctacttttcttctagtgcaaagaggaatttttattattctttcctgggcctgcaatc 440

                                                                       
Query: 241 cagcatcttcagcctgtggttttgaagagctcatagctgcctcttacctaggcagtgcaa 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 cagcatcttcagcctgtggttttgaagagctcatagctgcctcttacctaggcagtgcaa 500

                                                                       
Query: 301 gcttaacccagctagattttgttacctcgcctgccctctgctggacagagggaggaattc 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 gcttaacccagctagattttgttacctcgcctgccctctgctggacagagggaggaattc 560

                                                                       
Query: 361 ttaccaagcagttcatacagagccacaaggtttccaaatatccacagattttcaaataac 420
           ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 ttaccaagcagttcaaacagagccacaaggtttccaaatatccacagattttcaaataac 620

                  
Query: 421 agacatt 427
           |||||||
Sbjct: 621 agacatt 627


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 427
Length of database: 827
Length adjustment: 9
Effective length of query: 418
Effective length of database: 818
Effective search space:   341924
Effective search space used:   341924
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no481_l10.g1 MSMg01no481_l10.g1 CHROMAT_FILE:
MSMg01no481_l10.g1 PHD_FILE: MSMg01no481_l10.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:02:26 2005
         (632 letters)



>mm_chr19_60557704_60558735
          Length = 1032

 Score =  781 bits (404), Expect = 0.0
 Identities = 404/404 (100%)
 Strand = Plus / Minus

                                                                        
Query: 229  acaaagcaaaacacaaaattctacagagtccatttagtgtttctcacatctagatatagg 288
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1032 acaaagcaaaacacaaaattctacagagtccatttagtgtttctcacatctagatatagg 973

                                                                        
Query: 289  gctgcccacttgtgattggataacctaacagggagccatccctgaagaaaactgactctc 348
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 972  gctgcccacttgtgattggataacctaacagggagccatccctgaagaaaactgactctc 913

                                                                        
Query: 349  ccttcctcagcaaccattgattgcctgtacttcttcatctagaggtgagaccttgtgata 408
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 912  ccttcctcagcaaccattgattgcctgtacttcttcatctagaggtgagaccttgtgata 853

                                                                        
Query: 409  aatttcccatccacactgaacagtactttaaaagatgaaaatgactgagggtgttctctg 468
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 852  aatttcccatccacactgaacagtactttaaaagatgaaaatgactgagggtgttctctg 793

                                                                        
Query: 469  ccactggggtgggtgtggctgagacatgagtattgagttgtgacctgtagttcttccctt 528
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 792  ccactggggtgggtgtggctgagacatgagtattgagttgtgacctgtagttcttccctt 733

                                                                        
Query: 529  ccgttgttgtgtgctcagaggcgtctgagtttgtagtttgaatgggtggaagagacaagt 588
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 732  ccgttgttgtgtgctcagaggcgtctgagtttgtagtttgaatgggtggaagagacaagt 673

                                                        
Query: 589  cataaatgggcgaggctctataaagcttgccatatttcctaggt 632
            ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 672  cataaatgggcgaggctctataaagcttgccatatttcctaggt 629


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 632
Length of database: 1032
Length adjustment: 10
Effective length of query: 622
Effective length of database: 1022
Effective search space:   635684
Effective search space used:   635684
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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