Query= MSMg01no482_j12.b1 MSMg01no482_j12.b1 CHROMAT_FILE:
MSMg01no482_j12.b1 PHD_FILE: MSMg01no482_j12.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:03:32 2005
(638 letters)
>mm_chr19_23425939_23426976
Length = 1038
Score = 1027 bits (531), Expect = 0.0
Identities = 605/639 (94%), Gaps = 16/639 (2%)
Strand = Plus / Plus
Query: 6 aatttccttgtttcttagttctaaaaaacagaatggaatttctagcagcaacggtcccct 65
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 206 aatttccttgtttcttagttctaaaaaacagattggaatttctagcagcaacggtcccct 265
Query: 66 tactaccaatcacacccacacggtcaagctaaagcggatccacgtatacgaagtcaggca 125
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 266 tactaccaatcacacccacacggtcaagctaaagcggatccacgtatgcgaagtcaggca 325
Query: 126 gcacacgacattttctctcttttctgatctgttctcggggtgttctcttcatggcctgtc 185
|||||||||| |||||||||||||| |||||||||||||| |||||||||||||||||||
Sbjct: 326 gcacacgacagtttctctcttttctcatctgttctcggggagttctcttcatggcctgtc 385
Query: 186 agtgtttgctttaagaattaaaaacaaaacaaaacaaaacaaaacaacccaaactcatcc 245
||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 386 agtgtttgctttaagaattaaaaacaaaacaaaacaa----------cccaaactcatcc 435
Query: 246 gtgtaaggagagtcagggggcttgatctctcccacacacgggcagggcatgtgcggaccc 305
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 436 gtgtaaggagagtcagggggcttgatctctcccacacacgggcagggcatgtgcggacag 495
Query: 306 tgataggactgcgcccgcaagccagactcccaggaaagcctcaccaggccctggattcca 365
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 496 tgataggactacgcccgcaagccagactcccaggaaagcctcaccaggccctggattcca 555
Query: 366 gccttccagcctcacgacaggacaaaaagcagctgttgtgtaagccccagtctgcggtac 425
|||||||||||||| |||| ||| ||||||||||||||||||||||||||||||||||||
Sbjct: 556 gccttccagcctcatgacatgacgaaaagcagctgttgtgtaagccccagtctgcggtac 615
Query: 426 tttgtgagtgcaatggacaaatatgggtggccacaagacagccagacttttttttttttt 485
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 616 tttgtgaatgcaatggacaaatatgggtggccacaagacagccagacttttttttttttt 675
Query: 486 ttttt------gtaacctgaatatcatctttctgtttcttgctcacagcctttcagtggc 539
||||| |||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 676 tttttttttttgtaacctgaatatcatctttctgtttcttgcttacagcctttcagtggc 735
Query: 540 ttcttactgcctttctaataacccccagcgcttcctctgctcttccgaatccgtcgtctg 599
|||||||||||||||||||||||||||| ||||||||||||||| | ||||| ||||||
Sbjct: 736 ttcttactgcctttctaataacccccagtgcttcctctgctctttcaaatccaccgtctg 795
Query: 600 ctatcctctccatcttccacaccgttcctctctctacgg 638
|||||||||||||||||||||||||||||||||||||||
Sbjct: 796 ctatcctctccatcttccacaccgttcctctctctacgg 834
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 34
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 638
Length of database: 1038
Length adjustment: 10
Effective length of query: 628
Effective length of database: 1028
Effective search space: 645584
Effective search space used: 645584
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no482_j12.g1 MSMg01no482_j12.g1 CHROMAT_FILE:
MSMg01no482_j12.g1 PHD_FILE: MSMg01no482_j12.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:03:32 2005
(654 letters)
>mm_chr19_23480752_23481805
Length = 1054
Score = 1087 bits (562), Expect = 0.0
Identities = 628/650 (96%)
Strand = Plus / Minus
Query: 5 gtcttcttctctccatagcctgtttgaaaaaccttttctcaatttcttcttctcctcttc 64
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 975 gtcttcttctctccatagcctgtttgaaaaaccttttctcaatttcttctcctcctcttc 916
Query: 65 cacctgggacctggaaaacctgcctctatatcttcgtgcagcaattaatttctgttgcct 124
||||||||||||||||||||||||||||||| ||||| ||||||||| ||||| || ||
Sbjct: 915 cacctgggacctggaaaacctgcctctatattttcgtccagcaattagcttctgctgtct 856
Query: 125 ctatttaatcaaacaaataggcaatctccccctacatgtgcagagggtcacaacctcagc 184
|||||||||| ||||||||| ||| |||||||||||||||||| |||||||||||||||
Sbjct: 855 ttatttaatcagacaaataggtaatttccccctacatgtgcagaaggtcacaacctcagc 796
Query: 185 tcatgccagggtctgtctcctctctcttttcaactctctagaatgtgtttttaaatattg 244
||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||
Sbjct: 795 tcatgccagggtctgtctcctctctcttttcaactctctagaacgtgtttttaagtattg 736
Query: 245 gcccctggcccttcaccccacagaccttctcattttcttcccctccatccgtaccattgt 304
||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 735 gccccaggaacttcaccccacagaccttctcattttcttcccctccatccgtaccattgt 676
Query: 305 cctgggtacatggtctcaggaagagtcagtaccacggaagcatatcccatatggattcta 364
||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||
Sbjct: 675 cctgggtacatggtctcaggaagggtcagtatcacggaagcatatcccatatggattcta 616
Query: 365 agagcagagtgtggtgatggtggcacccatcctgagctgccaacatcaccaggaagaaat 424
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 615 agagcagagtgtggtgatggtggcacccatcctgagctgccaacatcaccaggaagaaat 556
Query: 425 tcagacaacttactaagatgagcacattactcagctccattgtagctgcctggcatgttc 484
||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||
Sbjct: 555 tcagacaacttactaagatgagcacgttactcagctccattgtagctgcctggcacgttc 496
Query: 485 ctgttcagggatgtttcagtagccgcaaacatcactgggctgcagggtttgaggatgcct 544
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 495 ctgttcagggatgtttcagtagccgcaaacatcactgggctgcagggcttgaggatgcct 436
Query: 545 gatggtagggtgagttggtgtcagcctgatttcctctcaccactgagttacaaacaggat 604
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 435 gatggtagggtgagttggtgtcagcctgatttcctctcaccactgagttacaaacaggat 376
Query: 605 gacccaacaatcctgtagacagttgccttgatctacaccaacctaaggga 654
||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 375 gacccaacaatcctgtagacagttgccttgatctacaccaacctaaggga 326
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 654
Length of database: 1054
Length adjustment: 10
Effective length of query: 644
Effective length of database: 1044
Effective search space: 672336
Effective search space used: 672336
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
