Query= MSMg01no483_b18.b1 MSMg01no483_b18.b1 CHROMAT_FILE:
MSMg01no483_b18.b1 PHD_FILE: MSMg01no483_b18.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:04:11 2005
(615 letters)
>mm_chr19_16418509_16419523
Length = 1015
Score = 944 bits (488), Expect = 0.0
Identities = 576/642 (89%), Gaps = 59/642 (9%)
Strand = Plus / Minus
Query: 5 ggaattcactcatgc-catccttggctacgcacaaatttggggttagcctaggctgcatg 63
|||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 638 ggaattcactcaagcacatccttggctacgcacaaatttggggttagcctaggctgcatg 579
Query: 64 aaaccctgttttaaccaaccaaccaaccaaccaaccaaccaaccaaccaaccaaccaacc 123
|||||||||||| ||||||||||||||||||||
Sbjct: 578 aaaccctgtttt----------------------------aaccaaccaaccaaccaacc 547
Query: 124 aaccaacacacccacccaccccagagtagaaacaaaagtcccataagacagtgattcttc 183
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 546 aaccaacacacccacccaccccagagtagaaacaaaggtcccataagacagtgattcttc 487
Query: 184 tgagtataatagtctttggtacttgcagcttggttgcatttacatctattccatttctct 243
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 486 tgagtataatagtctttggtacttgcagcttggttgcatttacatctattccatttctct 427
Query: 244 atcttaaagatggtgttcatgatttaatacttagaacctacaaccccaaaagggtttcca 303
||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||
Sbjct: 426 atcttaaagatggtgttcatgatttaacacttagaacctacaacccaaaaagggtttcca 367
Query: 304 actcactcaatgtgttaagacaaaacatttacaggctgtggtggtttgaataagaatgac 363
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 366 actcactcaatgtgttaagacaaaacatttacaggctgtggtggtttgaataagaatgac 307
Query: 364 atcccaccccctccttccatcccccaggctcatatatttgaatgcttaatcaccaaggaa 423
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 306 atcccaccccctcctcccatcccccaggctcatatatttgaatgcttaatcaccaaggaa 247
Query: 424 cggtagtgttcagaaagatgatgagatatggccttgtttgaggaagtgtcactaggaatg 483
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 246 cggtagtgttcagaaagatgatgagatatggccttgtttgaggaagtgtcactaggaatg 187
Query: 484 ggctttgaggtttcaaaaggccaaatcaggtcctatgagtgtgtgtgtgtgtgtgt---- 539
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 186 ggctttgaggtttcaaaaggccaaatcaggtcctgtgagtgtgtgtgtgtgtgtgtgtgt 127
Query: 540 ----------------------atgtgtgtctgtctgtctgtctgtct----ctacttgc 573
|||||||||||||||||||||||||| ||||||||
Sbjct: 126 gtgtgtgtgtgtgtgtgtgtgtatgtgtgtctgtctgtctgtctgtctgtctctacttgc 67
Query: 574 agttcaggatgtagctctcacctacttctccagtaccaggcc 615
|||||||||||||||||||| |||||||||||||||||||||
Sbjct: 66 agttcaggatgtagctctcatctacttctccagtaccaggcc 25
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 55
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 615
Length of database: 1015
Length adjustment: 10
Effective length of query: 605
Effective length of database: 1005
Effective search space: 608025
Effective search space used: 608025
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no483_b18.g1 MSMg01no483_b18.g1 CHROMAT_FILE:
MSMg01no483_b18.g1 PHD_FILE: MSMg01no483_b18.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:04:11 2005
(271 letters)
>mm_chr19_16251279_16251941
Length = 663
Score = 456 bits (236), Expect = e-133
Identities = 259/268 (96%), Gaps = 8/268 (2%)
Strand = Plus / Plus
Query: 1 taaagaaaatcaaagaacagtgagtttattccttttggactctcctttcttaggaagttt 60
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 201 taaagaaaatcaaagaacagtgagtttatttcttttggactctcctttcttaggaagttt 260
Query: 61 gctgattccattgttagctctgcagggccttcttgatagatcagctaaagaggttgagat 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gctgattccattgttagctctgcagggccttcttgatagatcagctaaagaggttgagat 320
Query: 121 tcagcaacgctgcccaggactagctagtaaccagcttgattgagccatccctgacctcac 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tcagcaacgctgcccaggactagctagtaaccagcttgattgagccatccctgacctcac 380
Query: 181 ggnnctctacctggcccctggagattcagggtgggccctgggcatggtgagggacagctt 240
|| |||||||||||||||| ||||||||||||| ||||| ||||||||||||||||||
Sbjct: 381 gg--ctctacctggcccctg-agattcagggtgg-ccctg--catggtgagggacagctt 434
Query: 241 ttggtgttgtagttcattggtgtgcaaa 268
| ||||||||||||||||| ||||||||
Sbjct: 435 t-ggtgttgtagttcattg-tgtgcaaa 460
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 271
Length of database: 663
Length adjustment: 9
Effective length of query: 262
Effective length of database: 654
Effective search space: 171348
Effective search space used: 171348
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
