Query= MSMg01no483_l24.b1 MSMg01no483_l24.b1 CHROMAT_FILE:
MSMg01no483_l24.b1 PHD_FILE: MSMg01no483_l24.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:05:04 2005
(584 letters)
>mm_chr19_59446887_59447870
Length = 984
Score = 1040 bits (538), Expect = 0.0
Identities = 571/582 (98%), Gaps = 2/582 (0%)
Strand = Plus / Plus
Query: 4 gaattctcatatcttccagactaaaactcccccccaaaaaaaatgttaacatttttaacc 63
||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 204 gaattctcatatcttttagactaaaactcccccccaaaaaaa-tgttaacatttttaacc 262
Query: 64 acacttgttatcttgtattttatagacacatcattgtaatttttttt-ctaagcccacag 122
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 263 acacttgttatcttgtattttatagacacatcattgtaatttttttttctaagcccacag 322
Query: 123 ggctattattattctggacgctttgtaggtcaatgacttctgagaaaggttttcattcaa 182
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 323 ggctattattattctggacgctttgtaggtcaatgacttctgagaaaggttttcattcaa 382
Query: 183 attgacttgagttatagaataccttccaaactctagaaaataagtgttctggtgctgttt 242
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 383 attgacttgagttatagaataccttccaaactctagaaaataagtgttctggtgctgttt 442
Query: 243 gccaaaggcaatcgttgttcttccttatttttatcaccatagattagtcttgcctactct 302
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 443 gccaaaggcaatcgttgttcttccttatttttatcaccatagattagtcttgcctactct 502
Query: 303 tgaacttggtgtaaacggaactatcccctactttattttttgctgaattatttcaaagca 362
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 503 tgaacttggtgtaaacggaactatcccctactttattttttgctgaattatttcaaagca 562
Query: 363 aatcccacaccctagatttctttcatctctgtttatcctgtacggctaaaagttatgtgc 422
||||||| | |||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 563 aatcccagattttagatttctttcatctctgtctatcctgtacggctaaaagttatgtgc 622
Query: 423 attttcttacataaccgtggttttgtgattacataagttcttcttaatggggtagttcct 482
|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 623 attttcttacataaccgtggttttgtgattacataagttcttcttaatggggtaactcct 682
Query: 483 tcttacagaggagcgcaccagctcagggaaggggaactactcgcctaagatcacccagga 542
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 683 tcttacagaggagcgcaccagctcagggaaggggaactactcgcctaagatcacccagga 742
Query: 543 agaatcttgagagagcaggcagttgtccagggggcctgcaga 584
||||||||||||||||||||||||||||||||||||||||||
Sbjct: 743 agaatcttgagagagcaggcagttgtccagggggcctgcaga 784
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 584
Length of database: 984
Length adjustment: 10
Effective length of query: 574
Effective length of database: 974
Effective search space: 559076
Effective search space used: 559076
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no483_l24.g1 MSMg01no483_l24.g1 CHROMAT_FILE:
MSMg01no483_l24.g1 PHD_FILE: MSMg01no483_l24.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:05:04 2005
(268 letters)
>mm_chr19_59594540_59595207
Length = 668
Score = 484 bits (250), Expect = e-141
Identities = 259/266 (97%), Gaps = 7/266 (2%)
Strand = Plus / Minus
Query: 1 tgcttcttggaggatcctggacactcctaacccagaatgttcatgtgtttgtgcttgggt 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 tgcttcttggaggatcctggacactcctaacccagaatgttcatgtgtttgtgcttgggt 266
Query: 61 gtgtgcctatgtgagtgcctgtgtgcacacatgcaaattgtgggtgcatacatgtgagtt 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 gtgtgcctatgtgagtgcctgtgtgcacacatgcaaattgtgggtgcatacatgtgagtt 206
Query: 121 tgggcatatgggtggatgtatgtcttctaagtcatactgcaaaatattcttcttactgtg 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 tgggcatatgggtggatgtatgtcttctaagtcatactgcaaaatattcttcttactgtg 146
Query: 181 agctatagacaaagatgtttaagggacacgaatcacagcttccataagcggcagcttagg 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 145 agctatagacaaagatgtttaagggacacgaatcacagcttccataagcggcagcttagg 86
Query: 241 taatgcatgtttgtggggtgggggtg 266
||||||| ||||||||||||
Sbjct: 85 taatgca-------ggggtgggggtg 67
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 268
Length of database: 668
Length adjustment: 9
Effective length of query: 259
Effective length of database: 659
Effective search space: 170681
Effective search space used: 170681
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
