Query= MSMg01no483_m18.b1 MSMg01no483_m18.b1 CHROMAT_FILE:
MSMg01no483_m18.b1 PHD_FILE: MSMg01no483_m18.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:05:08 2005
(549 letters)
>mm_chr19_21063509_21064458
Length = 950
Score = 1025 bits (530), Expect = 0.0
Identities = 545/550 (99%), Gaps = 1/550 (0%)
Strand = Plus / Plus
Query: 1 tacacacatgtgcattcatgcaccagtaagtataagttttatttgtaaagttaaaagtat 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tacacacatgtgcattcatgcaccagtaagtataagttttatttgtaaagttaaaagtat 260
Query: 61 tattgaaaaatataaaactagaaagaaaaacttacccacacttacactagaaaaccaact 120
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 261 tattgaaaaatataaaactagaaagaaaaacttacccacacttacactaaaaaaccaact 320
Query: 121 accatcactaatattctatgaattccttccaggactcttttttc-ttttttttccccttc 179
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 321 accatcactaatattctatgaattccttccaggactcttttttctttttttttccccttc 380
Query: 180 ccttctccctcttgctccaggacttgctcactctggtccaaagattttttaatttatttc 239
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ccttctccctcttgctccaggacttgctcactctggtccaaagattttttaatttatttc 440
Query: 240 tcattatatgtggtggtgagctaccatgtggttgctggtatttgaactcagaacttctgg 299
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tcattataggtggtggtgagctaccatgtggttgctggtatttgaactcagaacttctgg 500
Query: 300 aagagcaattggtgctcataaccgctgagctatctcctcagcccccaggactcttttctt 359
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 aagagcaattggtgctcataaccgctgagctatctcctcagcccccaggactcttttctt 560
Query: 360 cagtgtgtagttttaattaagatttttattacttttgtttatttgaaaatgaacacattc 419
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 561 cagtgtgtagttttaattaagatttttattacttttgtttatttgaaagtgaacacattc 620
Query: 420 atgacacggcatgcacatgaagctcagaagacaacctgcaggtgttggttctctccctcc 479
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 atgacacggcgtgcacatgaagctcagaagacaacctgcaggtgttggttctctccctcc 680
Query: 480 accatgtgaggttcaggaatcaaatgtgggtcatcaggcttggcagcaaatattttaaaa 539
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 accatgtgaggttcaggaatcaaatgtgggtcatcaggcttggcagcaaatattttaaaa 740
Query: 540 gctgagccat 549
||||||||||
Sbjct: 741 gctgagccat 750
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 549
Length of database: 950
Length adjustment: 10
Effective length of query: 539
Effective length of database: 940
Effective search space: 506660
Effective search space used: 506660
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no483_m18.g1 MSMg01no483_m18.g1 CHROMAT_FILE:
MSMg01no483_m18.g1 PHD_FILE: MSMg01no483_m18.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:05:08 2005
(594 letters)
>mm_chr19_21228363_21229357
Length = 995
Score = 1060 bits (548), Expect = 0.0
Identities = 583/595 (97%), Gaps = 1/595 (0%)
Strand = Plus / Minus
Query: 1 ttctgcagctcaagttagtacttgactctaggagttcaattttttctccctgtcgatttt 60
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 795 ttctgcagctcaagttagtacttgactataggagttcaattttttctccctgtcgatttt 736
Query: 61 ggcctaaccacaaagatttttccttttgtattggtttaagg-aaaaaaataaaatctcag 119
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 735 ggcctaaccacaaagatttttccttttgtattggtttaaggaaaaaaaataaaatctcag 676
Query: 120 agtctgtctttgctactggaatgtccagaaagcctggcttctcatcaatgttctcgtgcc 179
|| | ||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 675 aggcagtctttgctactggaatgtccagaaagcctggcttcttatcaatgttctcgtgcc 616
Query: 180 ttcaggaatccagtctcaaatgcaaatctcacaggctttctagggtttgacaaatgtcaa 239
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 615 ttcaggaatccagtctcaaatgcaaatttcacaggctttctagggtttgacaaatgtcaa 556
Query: 240 aataacttttgctctctctagtctgactgtgagctggtgccaatggtaattagaattcat 299
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 555 aataacttttgctctctctagtctgactgtgagctggtgccaatggtaattagaattcat 496
Query: 300 gaagacagattggctctggagacacacatagtaacaacgtaggggcacagggtagaagga 359
|||||||||||||||||||||||||||||||||| || || |||||||||||||||||||
Sbjct: 495 gaagacagattggctctggagacacacatagtaataatgtgggggcacagggtagaagga 436
Query: 360 ctgtacagctcatgcttatgtagtctgtagtcctgtatggatttcagtttttgagttaaa 419
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 435 ctgtacagctcatgcttatgtagtctgtagtcctgtatggatttcagtttttgagctaaa 376
Query: 420 ctgatttgaatgtttcatgtgttcagtatgcatattttagagagaaattcataaaaaagc 479
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 375 ctggtttgaatgtttcatgtgttcagtatgcatattttagagagaaattcataaaaaagc 316
Query: 480 tgccatggatgtggactgaactttggtctcatgaccagggatacttttttttctttatgc 539
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 315 tgccatggatgtggactgaactttggtctcatgaccagggatacttttttttctttatgc 256
Query: 540 aaaagtttgatcatgtcagtttcatatggaaaattaatatcttangggaatttag 594
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 255 aaaagtttgatcatgtcagtttcatatggaaaattaatatcttaggggaatttag 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 594
Length of database: 995
Length adjustment: 10
Effective length of query: 584
Effective length of database: 985
Effective search space: 575240
Effective search space used: 575240
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
