Query= MSMg01no487_i19.b1 MSMg01no487_i19.b1 CHROMAT_FILE:
MSMg01no487_i19.b1 PHD_FILE: MSMg01no487_i19.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:10:11 2005
(663 letters)
>mm_chr19_42703797_42704859
Length = 1063
Score = 1199 bits (620), Expect = 0.0
Identities = 653/664 (98%), Gaps = 2/664 (0%)
Strand = Plus / Plus
Query: 1 aatggatgaagtggactgttttatataatataaactctgggagaaggtttagaatctgat 60
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 201 aatggatgaagtggactgttttatatactataaactctgggagaaggtttagaatctgat 260
Query: 61 gttctttgaagataagggaaaaatggaacaatacagaaagaaacccaacttttcctgaaa 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gttctttgaagataagggaaaaatggaacaatacagaaagaaacccaacttttcctgaaa 320
Query: 121 acagagcatgtgccaggctgccctgaggctaccctgtctcactggccctgaggctagccc 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 acagagcatgtgccaggctgccctgaggctaccctgtctcactggccctgaggctagccc 380
Query: 181 ttatctgtgaggactccaagatcttcctaaggatgaaaaaagtaaggccaggtagagtta 240
|||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||
Sbjct: 381 ttatctgtgaggactccaagatcttcctaaggatgagaaaagtaaggtcaggtagagtta 440
Query: 241 aatatcttgtcactgtcatagctctgctgtgacaaggtttcccccagcgaggatccatgc 300
|||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 441 aatagcttgtcactgtcatagctctgctgtgacaaggttttccccagcgaggatccatgc 500
Query: 301 acccccccccaaccctaacctcatgttttctgggagatctttgtagtctgggacagtgga 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 acccccccccaaccctaacctcatgttttctgggagatctttgtagtctgggacagtgga 560
Query: 361 gggtgagtccaaacccgggggaatgaggaatcagaggcactagagagaccttagggacat 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 gggtgagtccaaacccgggggaatgaggaatcagaggcactagagagaccttagggacat 620
Query: 421 gcccacatttctagcctcttttgccagatagacgctagaaggatgttgagagctacttgc 480
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 621 gcccacatttctagcctcttttgccagatagacgctagaaggatgtcgagagctacttgc 680
Query: 481 tggactggatcttcctggtcggagaatactctgcacacgcctgagaacttcattcaaagc 540
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 cggactggatcttcctggtcggagaatactctgcacacgcctgagaacttcattcaaagc 740
Query: 541 aaagcattttcaaaccggtatgtgtat-ttccacctctgtgtttctggaggatgtcatgt 599
|||||||||||||||| ||||| |||| ||| ||||||||||||||||||||||||||||
Sbjct: 741 aaagcattttcaaaccagtatgcgtatcttc-acctctgtgtttctggaggatgtcatgt 799
Query: 600 ccttgggatagactggaagtgaccacacctgaatcctaagcctttatttagagcttaatt 659
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 800 ccttgggatagactggaagtgaccacacctgaatcctaagcctttatttagagcttaatt 859
Query: 660 ctga 663
||||
Sbjct: 860 ctga 863
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 663
Length of database: 1063
Length adjustment: 10
Effective length of query: 653
Effective length of database: 1053
Effective search space: 687609
Effective search space used: 687609
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no487_i19.g1 MSMg01no487_i19.g1 CHROMAT_FILE:
MSMg01no487_i19.g1 PHD_FILE: MSMg01no487_i19.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:10:12 2005
(599 letters)
>mm_chr19_42868162_42869159
Length = 998
Score = 1062 bits (549), Expect = 0.0
Identities = 586/605 (96%), Gaps = 13/605 (2%)
Strand = Plus / Minus
Query: 1 agcagttaagaacaggttctgttcttgcagaggacccagtttgattcccagcacgcacgc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 926 agcagttaagaacaggttctgttcttgcagaggacccagtttgattcccagcacgcacgc 867
Query: 61 tgagtagtttccaatctcctgtagccctggctccagggactccaatgccctcttctggcc 120
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 866 tgagtagtttccaatctcctgtagccctggctccggggactccaatgccctcttctggcc 807
Query: 121 tccataggggctgcattagtgtgtaaatatcaccccctccatgcacgcaaaaattgaaaa 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 806 tccataggggctgcattagtgtgtaaatatcaccccctccatgcacgcaaaaattgaaaa 747
Query: 181 tcagtctttaaagaagacacagcagcatgtggaggaagttccagacaatggaaacagcaa 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 746 tcagtctttaaagaagacacagcagcatgtggaggaagttccagacaatggaaacagcaa 687
Query: 241 aga------ttttttagccctgagattagaaaaactaaccagagaaattgcagcacaggg 294
||| ||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 686 agacagaag------agccctgagattagaaaaactaaccagagaagttgcagcacaggg 633
Query: 295 cgaaggaagtggtagacagggactagaaagggcagaagttagaatgagcctctaaggagc 354
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 632 cgaaggaagtggtagacagggactagaaagggcggaagttagaatgagcctctaaggagc 573
Query: 355 tggaggtgttgataaaagggtgggcttcggggaatgcagataaatgttctagaagccagt 414
|||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||
Sbjct: 572 tggaggtgttgataaaagggcgggcttcggggaatgcagat-gatgttctagaagccagt 514
Query: 415 gaacgtttagacaggtgaatggcacgctcagatttctgtttgttcaggatcattctaaat 474
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 513 gaacgtttagacaggtgaatggcacgctcagatttctgtttgttcaggatcattctaaat 454
Query: 475 tagatagtgaactttgccttaggctagctgttaggtctgggcagcctggctgacaaacag 534
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 453 taaatagtgaactttgccttaggctagctgttaggtctgggcagcctggctgacaaacag 394
Query: 535 gacaaaggagacctcaggttcatccgatctatctgttactccatcctctggagaaaccta 594
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 393 gacaaaggagacctcaggttcatccgatctatctgttactccatcctctggagaaaccta 334
Query: 595 aactc 599
|||||
Sbjct: 333 aactc 329
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 4
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 599
Length of database: 998
Length adjustment: 10
Effective length of query: 589
Effective length of database: 988
Effective search space: 581932
Effective search space used: 581932
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
