Query= MSMg01no488_a03.b1 MSMg01no488_a03.b1 CHROMAT_FILE:
MSMg01no488_a03.b1 PHD_FILE: MSMg01no488_a03.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:10:47 2005
(634 letters)
>mm_chr19_17756834_17757867
Length = 1034
Score = 1017 bits (526), Expect = 0.0
Identities = 599/630 (95%), Gaps = 12/630 (1%)
Strand = Plus / Minus
Query: 5 gaattcttgaatgtcctgtaattgtcttcatgaacaagttacgtcattcttctgaaacca 64
|||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 874 gaattcttgaatgt-gtgtaattgtcttcatgaacaagttacatcattcttctgaaacca 816
Query: 65 acaaacaactctgagctagacctcaaagaatgctgaaagagagtacacactacaaacaga 124
||||| ||||||||| ||||||||||||||||||| ||||||||||||||||||||| ||
Sbjct: 815 acaaaaaactctgaggtagacctcaaagaatgctgtaagagagtacacactacaaacgga 756
Query: 125 aacagagcaaagaatatacctgtaactgtaaacatacatattcagaataatgacagtaat 184
|| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 755 aatagagcaaagaatatacctgtatctgtaaacatacatattcagaataatgacagtaat 696
Query: 185 ggttatttatagagtaaaaaaaaaaaaaaaaaaaaaaaacctcagagttattctgactgt 244
||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 695 ggttatttatagagt-----------taaaaaaaaaaaacctcagagttattctgactgt 647
Query: 245 gtatagcttagacatgagtatgacacacagacaatccaggtcaagacactcttaaagtgt 304
|| ||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 646 gtgtagcttagatatgagtatgacacacagacaacccaggtcaagacactcttaaagtgt 587
Query: 305 gtgttgtttgtgaaaagaagactatgctgttgatgactttacccatctgttcataggacc 364
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 586 gtgttgtttgtgaaaagaagactatggtgttgatgactttacccatctgttcataggacc 527
Query: 365 accacgtggtacaagaacattctgataagtggtaacatcactggacatgaacacatcaat 424
|||||||||||||||||||||||||||||||||||| |||||||||||||| ||| ||||
Sbjct: 526 accacgtggtacaagaacattctgataagtggtaacgtcactggacatgaatacaacaat 467
Query: 425 gagcagttaccctgcatgggcttccactctactgaaagatatctttgttttgttttgcct 484
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 466 gagcagttaccctgcatgggcttccactctactgaaagatatctttgttttattttgcct 407
Query: 485 aagagtcttgcctaagagccctggatgttctggaaattattatgtacaccagcctggtct 544
||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||
Sbjct: 406 aagagtcttgcctaagagccctggatgttctggaaattactatgtagaccagcctggtct 347
Query: 545 tgaactcacagagctctgctctctcccactgtatctctagtgctgggattaaaggcatgt 604
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 346 tgaactcacagagctctgctctctcccactgtatctctagtgctgggattaaaggcatgt 287
Query: 605 gctacacatttttgttcagctagcactcag 634
||||||||||||||||||||||||||||||
Sbjct: 286 gctacacatttttgttcagctagcactcag 257
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 3
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 634
Length of database: 1034
Length adjustment: 10
Effective length of query: 624
Effective length of database: 1024
Effective search space: 638976
Effective search space used: 638976
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no488_a03.g1 MSMg01no488_a03.g1 CHROMAT_FILE:
MSMg01no488_a03.g1 PHD_FILE: MSMg01no488_a03.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:10:47 2005
(623 letters)
>mm_chr19_17589571_17590594
Length = 1024
Score = 1025 bits (530), Expect = 0.0
Identities = 591/624 (94%), Gaps = 21/624 (3%)
Strand = Plus / Plus
Query: 1 actgggaggacttctgaggggccaagagtgatcgtgtttcactgtatagatttgtcctac 60
|||||||||||||||||||| ||||||||| | ||||||||||||| |||||||||||||
Sbjct: 221 actgggaggacttctgagggaccaagagtggttgtgtttcactgtacagatttgtcctac 280
Query: 61 tgctctagaaacacaagtgatgcctggggcagatcatctcaggacctgggagatattagt 120
||||| |||||||||||||||||||||||| ||||||||||
Sbjct: 281 tgctccagaaacacaagtgatgcctggggc--------------------agatattagt 320
Query: 121 cacgtacccatccttggcccaatatatagatccaacagcaagctaaccggaacctggcta 180
|||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 321 cacgtacctatccttggcccaatatatagatccaacagcaaggtaaccggaacctggcta 380
Query: 181 ggggtatgaccccaaatctgcttgcaactggtgcccacccagatgagggctccaccaacc 240
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 381 ggggtatgaccccaaatctgcttgcaactggtgcccacccagatgaaggctccaccaacc 440
Query: 241 cagtcagtatcagatgtagtctctgcctttcaagatactaaatgggctgctgaatcctga 300
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 cagtcagtatcagaagtagtctctgcctttcaagatactaaatgggctgctgaatcctga 500
Query: 301 ggccttggagaaagctttcttcctttagttatcaacatgcccacattgggtgtgtcatat 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 ggccttggagaaagctttcttcctttagttatcaacatgcccacattgggtgtgtcatat 560
Query: 361 ctaagtgcgctggaagtgtataatgaagcactattctgaaggtcacatgctatccagaaa 420
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 ctaagtgagctggaagtgtataatgaagcactattctgaaggtcacatgctatccagaaa 620
Query: 421 accgccttatgcatattacaagcatatgaactcagattttatttgctcacacatggagtc 480
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 621 accgccttatgcatattacaagcatatgaactcagattttatttgctcacacacggagtc 680
Query: 481 tcgcgacctgtttaatcgtcactgcaaacacccccc-taaaggcctggaacaatggttag 539
|||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||
Sbjct: 681 tcgcgacctgtttaatcgtcactgcaaacaccccccctaaaggcctggaacaacggttag 740
Query: 540 aaaacggcctcttaaaacctttggttttatatgtgtggaatctatatcatggtgtctctg 599
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 aaaacggcctcttaaaacctttggttttatatgtgtggaatctatatcatggtgtctctg 800
Query: 600 ctaatatttttgtgtatgggtttc 623
||||||||||||||||||||||||
Sbjct: 801 ctaatatttttgtgtatgggtttc 824
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 623
Length of database: 1024
Length adjustment: 10
Effective length of query: 613
Effective length of database: 1014
Effective search space: 621582
Effective search space used: 621582
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
