Query= MSMg01no488_c03.b1 MSMg01no488_c03.b1 CHROMAT_FILE:
MSMg01no488_c03.b1 PHD_FILE: MSMg01no488_c03.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:10:57 2005
(680 letters)
>mm_chr19_17756826_17757905
Length = 1080
Score = 1089 bits (563), Expect = 0.0
Identities = 636/667 (95%), Gaps = 11/667 (1%)
Strand = Plus / Minus
Query: 14 gaattcttgaatgtctgtaattgtcttcatgaacaagttacgtcattcttctgaaaccaa 73
|||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 882 gaattcttgaatgtgtgtaattgtcttcatgaacaagttacatcattcttctgaaaccaa 823
Query: 74 caaacaactctgagctagacctcaaagaatgctgaaagagagtacacactacaaacagaa 133
|||| ||||||||| ||||||||||||||||||| ||||||||||||||||||||| |||
Sbjct: 822 caaaaaactctgaggtagacctcaaagaatgctgtaagagagtacacactacaaacggaa 763
Query: 134 acagagcaaagaatatacctgtaactgtaaacatacatattcagaataatgacagtaatg 193
| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 762 atagagcaaagaatatacctgtatctgtaaacatacatattcagaataatgacagtaatg 703
Query: 194 gttatttatagagtaaaaaaaaaaaaaaaaaaaaaaaacctcagagttattctgactgtg 253
|||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 702 gttatttatagagt-----------taaaaaaaaaaaacctcagagttattctgactgtg 654
Query: 254 tatagcttagacatgagtatgacacacagacaacccaggtcaagacactcttaaagtgtg 313
| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 653 tgtagcttagatatgagtatgacacacagacaacccaggtcaagacactcttaaagtgtg 594
Query: 314 tgttgtttgtgaaaagaagactatgctgttgatgactttacccatctgttcataggacca 373
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 593 tgttgtttgtgaaaagaagactatggtgttgatgactttacccatctgttcataggacca 534
Query: 374 ccacgtggtacaagaacattctgataagtggtaacatcactggacatgaacacatcaatg 433
||||||||||||||||||||||||||||||||||| |||||||||||||| ||| |||||
Sbjct: 533 ccacgtggtacaagaacattctgataagtggtaacgtcactggacatgaatacaacaatg 474
Query: 434 agcagttaccctgcatgggcttccactctactgaaagatatctttgttttgttttgccta 493
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 473 agcagttaccctgcatgggcttccactctactgaaagatatctttgttttattttgccta 414
Query: 494 agagtcttgcctaagagccctggatgttctggaaattattatgtacaccagcctggtctt 553
|||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||
Sbjct: 413 agagtcttgcctaagagccctggatgttctggaaattactatgtagaccagcctggtctt 354
Query: 554 gaactcacagagctctgctctctcccactgtatctctagtgctgggattaaaggcatgtg 613
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 353 gaactcacagagctctgctctctcccactgtatctctagtgctgggattaaaggcatgtg 294
Query: 614 ctacacatttttgttcagctagcactcagaattagtcaatacgatgtaatatttgagcag 673
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 293 ctacacatttttgttcagctagcactcagaattagtcaatatgatgtaatatttgagcag 234
Query: 674 cgagctc 680
| |||||
Sbjct: 233 caagctc 227
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 680
Length of database: 1080
Length adjustment: 10
Effective length of query: 670
Effective length of database: 1070
Effective search space: 716900
Effective search space used: 716900
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no488_c03.g1 MSMg01no488_c03.g1 CHROMAT_FILE:
MSMg01no488_c03.g1 PHD_FILE: MSMg01no488_c03.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:10:57 2005
(665 letters)
>mm_chr19_17589570_17590635
Length = 1066
Score = 1106 bits (572), Expect = 0.0
Identities = 633/666 (95%), Gaps = 21/666 (3%)
Strand = Plus / Plus
Query: 1 cactgggaggacttctgaggggccaagagtgatcgtgtttcactgtatagatttgtccta 60
||||||||||||||||||||| ||||||||| | ||||||||||||| ||||||||||||
Sbjct: 221 cactgggaggacttctgagggaccaagagtggttgtgtttcactgtacagatttgtccta 280
Query: 61 ctgctctagaaacacaagtgatgcctggggcagatcatctcaggacctgggagatattag 120
|||||| |||||||||||||||||||||||| |||||||||
Sbjct: 281 ctgctccagaaacacaagtgatgcctggggc--------------------agatattag 320
Query: 121 tcacgtacccatccttggcccaatatatagatccaacagcaagctaaccggaacctggct 180
||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 321 tcacgtacctatccttggcccaatatatagatccaacagcaaggtaaccggaacctggct 380
Query: 181 aggggtatgaccccaaatctgcttgcaactggtgcccacccagatgagggctccaccaac 240
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 381 aggggtatgaccccaaatctgcttgcaactggtgcccacccagatgaaggctccaccaac 440
Query: 241 ccagtcagtatcagatgtagtctctgcctttcaagatactaaatgggctgctgaatcctg 300
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ccagtcagtatcagaagtagtctctgcctttcaagatactaaatgggctgctgaatcctg 500
Query: 301 aggccttggagaaagctttcttcctttagttatcaacatgcccacattgggtgtgtcata 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 aggccttggagaaagctttcttcctttagttatcaacatgcccacattgggtgtgtcata 560
Query: 361 tctaagtgcgctggaagtgtataatgaagcactattctgaaggtcacatgctatccagaa 420
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 tctaagtgagctggaagtgtataatgaagcactattctgaaggtcacatgctatccagaa 620
Query: 421 aaccgccttatgcatattacaagcatatgaactcagattttatttgctcacacatggagt 480
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 621 aaccgccttatgcatattacaagcatatgaactcagattttatttgctcacacacggagt 680
Query: 481 ctcgcgacctgtttaatcgtcactgcaaacacccccc-taaaggcctggaacaatggtta 539
||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||
Sbjct: 681 ctcgcgacctgtttaatcgtcactgcaaacaccccccctaaaggcctggaacaacggtta 740
Query: 540 gaaaacggcctcttaaaacctttggttttatatgtgtggaatctatatcatggtgtctct 599
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 gaaaacggcctcttaaaacctttggttttatatgtgtggaatctatatcatggtgtctct 800
Query: 600 gctaatatttttgtgtatgggtttcatccttctttgcagggaaatcataagagcagatgg 659
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 801 gctaatatttttgtgtatgggtttcatccttctttgcagggaaatcataagagcagatgg 860
Query: 660 gattaa 665
||||||
Sbjct: 861 gattaa 866
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 665
Length of database: 1066
Length adjustment: 10
Effective length of query: 655
Effective length of database: 1056
Effective search space: 691680
Effective search space used: 691680
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
