BAC Information

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BAC

Clone NameMSMg01-488D15
Chromosome19 (Build37)
Map Location 60,964,658 - 61,095,906
singlet/doubletdoublet
Overlap geneGprk5, LOC671322
Upstream geneRab11fip2, LOC100043087, LOC100043091, LOC100043093, D19Ertd737e, 4933412A08Rik, Prlhr, 2700078E11Rik, Nanos1, Eif3s10, 1810055E12Rik, Sfxn4, Prdx3
Downstream geneBC029127, LOC100043112, EG547091, LOC433261, EG633057, Csf2ra, LOC100043120
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-488D15.T7 (MSMg01no488_d15.b1)MSMg01-488D15.TJ (MSMg01no488_d15.g1)
ACCAG567001AG567002
length690691
length of high quality
(start - end)		634 (54 - 687)628 (58 - 685)
definitionCHROMAT_FILE: MSMg01no488_d15.b1 PHD_FILE: MSMg01no488_d15.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:11:05 2005CHROMAT_FILE: MSMg01no488_d15.g1 PHD_FILE: MSMg01no488_d15.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:11:05 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(60,964,658 - 60,965,291)(61,095,279 - 61,095,906)
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCAAGTTCTACC
AACCACATGGTGGCTCACAACCATCCATAAGGAGATGAGATGTGACACCC
TCTTCTGATGTGTCTGAAGACAGCTAAAGTGTACTTACATATAACTTTCT
TTTTGAGAGAGATTCCTTCATCACACGTTGGGGCTCTGGGAATGAGAGTC
TGTAGTAAAGTCTAAGTTTAGATTGCTTAGAACAGTAGTAATTCCTGTGC
TGTCAGGTGCTCAAGTTGTTTGCTCAACTCTCTGTCTTCTGACAAGCAAA
CTTTATTCTTCTTGTAGACAAGTGAGGCCCACTGATCCAAGTCCAGACAC
TAGGCAAGTGGTGGTGGCAGATATACCCACTAGGAAAAAGACTATCACTA
ACTGTTAGAACCAGCACTAGTCTGGTAACCACACTTAAAACACCATTAGC
TCCAATGCTTAATGACTGTTTTCCATTTCTCTAGGCCCCTCCCTATTTCC
TGGCTGCTCTGGGGACAGCCGGCTTTTCCTTCTCTTGGACACAGAAGCCT
CAGACTAGTTTCAGAACGGATATCCGGCCCGAAAGGCCCAGAGGAGGCAA
AGGCCTCATTGTTCCCTGGGACCTGGCAGCCCCGCCCCCAGCTCTTAGGA
CTCTCCTCGAAAGACTCCAGGTGACCGGACAGCTAATTTC

XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXCTGGGAAGGTGTAGTAATAATAGTCTCCCCAAAGTCCTAATGT
CTCTAGGTTAGCAATTTCTTAGTCCTCACATGATTTCCTTCAACATGATT
CCCAATGAAAAATTCAGTCTTAGCCTGTGTATTCATGGCAGGCATTTCAC
CAATCAGTACCCAAGACTCTTTCTCAACCTGGTGCAAAGACACCAGTCTT
AGCAGGAAACTCAATCTGCTCTTCAGTTCTCATTCTTGGTATGCAGAGAA
AAAAATACAGAAGGACCCTCCTCTATTTCTTCCTCCAAGCCATCATGGGT
TTGACCCGTTGGAATATAACCCTGATCTTTGGTATAGTTTGGCAAATATC
AAACTACATCAAATCCTTCTTTCAAGCCTTCCACCTGTGATTAGCCTGGC
TTTAGTCTAATGAGGAGTTGTAAATGCTAAAGAGGGAAATAGAGGTGTGC
TCACAGGCATAAGAGTTTACCCAATGTCTGTTTCAGATAGAGATCAGAGG
AAGACGGTGTTTTACCAGGATCTAGTACAGGGGAGCAGGTATCTAGACTT
AGATATTGCTTAGAGATGTCACCTGTTGATGTTGGGACTGTGTGTGCATA
AGCAAGTACATGTGTGTATGTAATGTATGTGTGAGAGTACN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no488_d15.b1 MSMg01no488_d15.b1 CHROMAT_FILE:
MSMg01no488_d15.b1 PHD_FILE: MSMg01no488_d15.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:11:05 2005
         (634 letters)



>mm_chr19_60964458_60965491
          Length = 1034

 Score = 1210 bits (626), Expect = 0.0
 Identities = 632/634 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   cacatggtggctcacaaccatccataaggagatgagatgtgacaccctcttctgatgtgt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 cacatggtggctcacaaccatccataaggagatgagatgtgacaccctcttctgatgtgt 260

                                                                       
Query: 61  ctgaagacagctaaagtgtacttacatataactttctttttgagagagattccttcatca 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ctgaagacagctaaagtgtacttacatataactttctttttgagagagattccttcatca 320

                                                                       
Query: 121 cacgttggggctctgggaatgagagtctgtagtaaagtctaagtttagattgcttagaac 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 cacgttggggctctgggaatgagagtctgtagtaaagtctaagtttagattgcttagaac 380

                                                                       
Query: 181 agtagtaattcctgtgctgtcaggtgctcaagttgtttgctcaactctctgtcttctgac 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 agtagtaattcctgtgctgtcaggtgctcaagttgtttgctcaactctctgtcttctgac 440

                                                                       
Query: 241 aagcaaactttattcttcttgtagacaagtgaggcccactgatccaagtccagacactag 300
           |||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 aagcaaacttaactcttcttgtagacaagtgaggcccactgatccaagtccagacactag 500

                                                                       
Query: 301 gcaagtggtggtggcagatatacccactaggaaaaagactatcactaactgttagaacca 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 gcaagtggtggtggcagatatacccactaggaaaaagactatcactaactgttagaacca 560

                                                                       
Query: 361 gcactagtctggtaaccacacttaaaacaccattagctccaatgcttaatgactgttttc 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 gcactagtctggtaaccacacttaaaacaccattagctccaatgcttaatgactgttttc 620

                                                                       
Query: 421 catttctctaggcccctccctatttcctggctgctctggggacagccggcttttccttct 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 catttctctaggcccctccctatttcctggctgctctggggacagccggcttttccttct 680

                                                                       
Query: 481 cttggacacagaagcctcagactagtttcagaacggatatccggcccgaaaggcccagag 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 cttggacacagaagcctcagactagtttcagaacggatatccggcccgaaaggcccagag 740

                                                                       
Query: 541 gaggcaaaggcctcattgttccctgggacctggcagccccgcccccagctcttaggactc 600
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 gaggcaaaggcctcattgttccctgggacctggcagccccgcccccagctcttaggactc 800

                                             
Query: 601 tcctcgaaagactccaggtgaccggacagctaat 634
           ||||||||||||||||||||||||||||||||||
Sbjct: 801 tcctcgaaagactccaggtgaccggacagctaat 834


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 634
Length of database: 1034
Length adjustment: 10
Effective length of query: 624
Effective length of database: 1024
Effective search space:   638976
Effective search space used:   638976
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no488_d15.g1 MSMg01no488_d15.g1 CHROMAT_FILE:
MSMg01no488_d15.g1 PHD_FILE: MSMg01no488_d15.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:11:05 2005
         (628 letters)



>mm_chr19_61095079_61096106
          Length = 1028

 Score = 1214 bits (628), Expect = 0.0
 Identities = 628/628 (100%)
 Strand = Plus / Minus

                                                                       
Query: 1   ctgggaaggtgtagtaataatagtctccccaaagtcctaatgtctctaggttagcaattt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 828 ctgggaaggtgtagtaataatagtctccccaaagtcctaatgtctctaggttagcaattt 769

                                                                       
Query: 61  cttagtcctcacatgatttccttcaacatgattcccaatgaaaaattcagtcttagcctg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 768 cttagtcctcacatgatttccttcaacatgattcccaatgaaaaattcagtcttagcctg 709

                                                                       
Query: 121 tgtattcatggcaggcatttcaccaatcagtacccaagactctttctcaacctggtgcaa 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 708 tgtattcatggcaggcatttcaccaatcagtacccaagactctttctcaacctggtgcaa 649

                                                                       
Query: 181 agacaccagtcttagcaggaaactcaatctgctcttcagttctcattcttggtatgcaga 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 648 agacaccagtcttagcaggaaactcaatctgctcttcagttctcattcttggtatgcaga 589

                                                                       
Query: 241 gaaaaaaatacagaaggaccctcctctatttcttcctccaagccatcatgggtttgaccc 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 588 gaaaaaaatacagaaggaccctcctctatttcttcctccaagccatcatgggtttgaccc 529

                                                                       
Query: 301 gttggaatataaccctgatctttggtatagtttggcaaatatcaaactacatcaaatcct 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 528 gttggaatataaccctgatctttggtatagtttggcaaatatcaaactacatcaaatcct 469

                                                                       
Query: 361 tctttcaagccttccacctgtgattagcctggctttagtctaatgaggagttgtaaatgc 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 468 tctttcaagccttccacctgtgattagcctggctttagtctaatgaggagttgtaaatgc 409

                                                                       
Query: 421 taaagagggaaatagaggtgtgctcacaggcataagagtttacccaatgtctgtttcaga 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 408 taaagagggaaatagaggtgtgctcacaggcataagagtttacccaatgtctgtttcaga 349

                                                                       
Query: 481 tagagatcagaggaagacggtgttttaccaggatctagtacaggggagcaggtatctaga 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 348 tagagatcagaggaagacggtgttttaccaggatctagtacaggggagcaggtatctaga 289

                                                                       
Query: 541 cttagatattgcttagagatgtcacctgttgatgttgggactgtgtgtgcataagcaagt 600
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 288 cttagatattgcttagagatgtcacctgttgatgttgggactgtgtgtgcataagcaagt 229

                                       
Query: 601 acatgtgtgtatgtaatgtatgtgtgag 628
           ||||||||||||||||||||||||||||
Sbjct: 228 acatgtgtgtatgtaatgtatgtgtgag 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 33
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 628
Length of database: 1028
Length adjustment: 10
Effective length of query: 618
Effective length of database: 1018
Effective search space:   629124
Effective search space used:   629124
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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