NCCTCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCG
CGGAATTCACCGTATTCCCAACATAACCCTTCCACTCACTAAGCCTGGGC
CATGCTTACCAAGCAAGATGTCAACTTCAGACGAAGGACGATCAGTTGTA
CTCTCAGCCGTCGGCCACAAGGGGCCTGCTCTTATTTCTGCTTTCAGAAT
TCTCATTCTCTTATCCCTCTAACTAGTAACATTAAATTTTCTTAAGACTA
TGAGATTCTTTTTCCTAAATATATTAAAACCAAGTACAGTAATAACAAGT
CACTGCAAAATAAATGGACAATAACATACCTCTTTGTACCCAAAATGCTG
ACCATATCAAATATGGGCAAAGAGGTAGGGGAAAATTCTCATGGGAATAA
TTTAGCACAACTTCATAAAATAATGTGTTTCTATCTTAATAGTTAAAGAT
AGGCACGCTGCAGTGCTATGATTGACAGTAGCAGTGCTGTGCTCACACCA
CAGTGCAGTGGCTGGCAGTGGGAGTGCAGTGCTCACACCACAGTGCAATG
GCTGACAGTGGCAGTGTTGTGACCATAACACAGGGCAGTGGCTGACAGTG
GCAGTGCAGTGCTCACACCATANTGCAGTGGCTGACAGTGGCAGTGCAGT
GCTCACACCATANTGCAGTGGCTGACAGTGGCAGTGCAGTGCTCACACCA
TAGTGCAGTGGCTGACAGTGGCAGTACAGTGCTCACACCATANTGCANTG
GCTGACAGTGGCAGTGCTGTGCTCACACCTAGTGG

CCGATGCAGTGGGAGGTCTGGCGGCCGCCTGGCTCCGAAATAGCGTGACC
TATAGAAGGTTCGCGAAAGGCCTAATGGATCAAAGGGGAGATTAGGGAGT
ACTCAAAGTGCCCAAATGGCTCCTTGGGCGGCAAGAATGGATGTGCTAGA
TGAAATATACAAACACNNGTATCCACAGAATGGGGACCCGGGGGGATTTC
CTTGGTNNNNNNNNNNNNAAAACANNNTNTTTTTTAAAAAAAAAAAACCC
CCCCCAATATCCCCCCCCATAAAAAAAAAGCCCCCCCCCCCTCATAAAAA
AAAAAAAATGGGGGGGGGGTCTCCCCCCGGGGGAAAAAAAAAACCTCCCC
CCCATAATCGGGGTGGGGGTTTTTTCTTTTGTTGGTCGAGCTCTTTTATT
TTTTTANCTTTTTGTTTTTCCTCCCCCTCTAATTCTAAACACTCTCTTTT
TTGTGTTGTGGCCGCCCCCCATTCAAAATTCATCATTTCCCCTCTTCCTC
TGTTTTTTTTTTTTTTCTTTTCCTATTCCTTTTAAANAAACCCCTCCTAT
GTAAATATATTATTGTAATTTCTCCCCCCCCCGTTTTTTTCTTTTGTTTC
ACCCTTACTCTCTTCCGTCTGGCGGGGGTGTTTTTCGCCTTATTATTACT
ATTCACCCCCCCCCCTGCCTTTTTCATTCATCCCCTATTTGATTAACGCA
TGGCCGTTGCTCTCTGTTGACTCGTAACAGTTTCTTTTCCTCATCCGTGC
GCTGG

Query= MSMg01no489_p15.b1 MSMg01no489_p15.b1 CHROMAT_FILE:
MSMg01no489_p15.b1 PHD_FILE: MSMg01no489_p15.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:13:25 2005
         (603 letters)



>mm_chr19_57699305_57700309
          Length = 1005

 Score =  886 bits (458), Expect = 0.0
 Identities = 563/601 (93%), Gaps = 8/601 (1%)
 Strand = Plus / Minus

                                                                       
Query: 8   ttcaccgtattcccaacataacccttccactcactaagcctgggccatgcttaccaagca 67
           |||||||||  |||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 805 ttcaccgtagccccaacataacccttccactcactaagcctgggctatgcttaccaagca 746

                                                                       
Query: 68  agatgtcaacttcagacgaaggacgatcagttgtactctcagccgtcggccacaaggggc 127
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 745 agatgtcaacttcagacgaaggacgatcagttgtactctcagccgtcggccacaaggggc 686

                                                                       
Query: 128 ctgctcttatttctg--ctttcagaattctcattctcttatccctctaactagtaacatt 185
           ||||||| |||||||  |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 685 ctgctctcatttctgctctttcagaattctcattctcttatccctctaactagtaacatt 626

                                                                       
Query: 186 aaattttcttaagactatgagattctttttcctaaatatattaaaaccaagtacagtaat 245
           ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 625 aaattttcttaagactatgagattctttttcctaaatatgttaaaaccaagtacagtaat 566

                                                                       
Query: 246 aacaagtcactgcaaaataaatggacaataacatacctctttgtacccaaaatgctgacc 305
             ||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||
Sbjct: 565 gccaagtcactgcaaaataaatggacaataacatatctctttgcacccaaaatgctgacc 506

                                                                       
Query: 306 atatcaaatatgggcaaagaggtaggggaaaattctcatgggaataatttagcacaactt 365
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 atatcaaatatgggcaaagaggtaggggaaaattctcatgggaataatttagcacaactt 446

                                                                       
Query: 366 cataaaataatgtgtttctatcttaatagttaaagataggcacgctgcagtgctatgatt 425
           ||||||||||| || | |||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 445 cataaaataatatgctgctatcttaatagttaaagataggcacactgcagtgctatgatt 386

                                                                       
Query: 426 gacagtagcagtgctgtgctcacaccacagtgcagtggctggcagtgggagtgcagtgct 485
           |||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||
Sbjct: 385 gacagtagcagtgctgtgctcacaccacagtgcagtggctggcagtggcagtgctgtgct 326

                                                                       
Query: 486 cacaccacagtgcaatggctgacagtggcagtgttgtgaccataacac---agggcagtg 542
           |||||||||||||| |||||| ||||||||||| |||| |  | ||||   || ||| ||
Sbjct: 325 cacaccacagtgcagtggctggcagtggcagtgctgtg-c--tcacactatagtgcaatg 269

                                                                       
Query: 543 gctgacagtggcagtgcagtgctcacaccatantgcagtggctgacagtggcagtgcagt 602
           ||| | ||||||||||| |||||||||||| | ||||  ||||| |||||| ||||||||
Sbjct: 268 gctaatagtggcagtgctgtgctcacaccacagtgcaacggctggcagtgggagtgcagt 209

            
Query: 603 g 603
           |
Sbjct: 208 g 208


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 55
Number of extensions: 5
Number of successful extensions: 5
Number of sequences better than 10.0: 1
Number of HSP's gapped: 4
Number of HSP's successfully gapped: 1
Length of query: 603
Length of database: 1005
Length adjustment: 10
Effective length of query: 593
Effective length of database: 995
Effective search space:   590035
Effective search space used:   590035
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)