Query= MSMg01no491_f03.b1 MSMg01no491_f03.b1 CHROMAT_FILE:
MSMg01no491_f03.b1 PHD_FILE: MSMg01no491_f03.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:15:12 2005
(602 letters)
>mm_chr19_17990865_17991866
Length = 1002
Score = 1064 bits (550), Expect = 0.0
Identities = 582/602 (96%), Gaps = 15/602 (2%)
Strand = Plus / Plus
Query: 1 tggtgtgtagatgaacatctttttatatgtataatattaaactaaattaacttattaaat 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tggtgtgtagatgaacatctttttatatgtataatattaaactaaattaacttattaaat 260
Query: 61 gttttagtaccccaaaaagtagtaaacagaataatttcacacccctataaatacctatta 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gttttagtaccccaaaaagtagtaaacagaataatttcacacccctataaatacctatta 320
Query: 121 tttaaaacttagtgtgtcagctttataaatgcccagtttttttctttgctgaattattta 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tttaaaacttagtgtgtcagctttataaatgcccagtttttttctttgctgaattattta 380
Query: 181 tatttaaggcaaatctcagatgtcatgcaactttacccccatacatacatatgtatgttt 240
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 381 tatttaaggcaaatctcagatgtcatgcaactttacccccatacatacatatgcatgttt 440
Query: 241 acttctgtgtgtgcatgtgtgtatatgtgtgcctgtgtataagtgtgcatgtttgtgtat 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 acttctgtgtgtgcatgtgtgtatatgtgtgcctgtgtataagtgtgcatgtttgtgtat 500
Query: 301 tggtgagaacatttgcgtgtgcagctgaaagtgcatgtgtgcatgcctgtggagaccaga 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 tggtgagaacatttgcgtgtgcagctgaaagtgcatgtgtgcatgcctgtggagaccaga 560
Query: 361 aggcagtctcaggggccatttcatgggcacctttcacagtggcttcaagacaaaggtctc 420
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 561 aggcagtctcaggggccatttcatgggtacctttcacagtggcttcaagacaaaggtctc 620
Query: 421 tcgtgtttgaatctctaccaagtaggccactctagctggccagtgggcttctttctagat 480
| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 t---------------accaagtaggccactctagctggccagtgggcttctttctagat 665
Query: 481 gtttgcctgtctctgctcctcattgtgtcgtcgatgggatggcgagtgcattccaccatg 540
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 666 gtttgcctgtctctgctcctcattgtgtcgtcgatgggatggcaagtgcattccaccatg 725
Query: 541 cctggccttttacagggatcccagggttctgggaatccattcttcacatttacaaagtaa 600
|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 726 cctggccttttatggggatcccagggttctgggaatccattcttcacatttacaaagtaa 785
Query: 601 at 602
||
Sbjct: 786 at 787
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 602
Length of database: 1002
Length adjustment: 10
Effective length of query: 592
Effective length of database: 992
Effective search space: 587264
Effective search space used: 587264
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no491_f03.g1 MSMg01no491_f03.g1 CHROMAT_FILE:
MSMg01no491_f03.g1 PHD_FILE: MSMg01no491_f03.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:15:12 2005
(648 letters)
>mm_chr19_18160361_18161408
Length = 1048
Score = 1062 bits (549), Expect = 0.0
Identities = 591/613 (96%), Gaps = 15/613 (2%)
Strand = Plus / Minus
Query: 36 cagaaaaacaaaacagaaaaaaacacaatggaatttcttcagccataaaaagtagactga 95
|||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 1032 cagaaa---aaaacagaaaaaaacacaatggaatttcttcagccataaaaagtggactga 976
Query: 96 tgtcattttcaggaaaattaatacaaatggagacaatcactttaagtgaagtaattcagt 155
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 975 tgtcattttcaggaaaattgatacaaatggagacaatcactttaagtgaagtaattcagt 916
Query: 156 ctcaggaagataaatattgcatgctttggctcatttgtttttcttatattttatatatat 215
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 915 ctcaggaagataaatattgcatgctttggctcatttgtttttcttatattttatatatat 856
Query: 216 atatatatatatatatataaaactaggtatgtatatgtgaaataaaattattaagcaaag 275
||| | ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 855 ata-----------a-ataaaactaggtatgtatatgtgaaataaaattattaagcaaag 808
Query: 276 caaacatgcccaagagaacaaggacaaaaggcagaaggcactccatttacatgctatact 335
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 807 caaacatgcccaagagaacaaggacaaaaggcagaaggcactccatttacatgctatact 748
Query: 336 tatatgaagatgtccttatgtgatgtgacttagtgctatattcaataatgatacacaatg 395
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 747 tatatgaagatgtccttatgtgatgcgacttagtgctatattcaataatgatacacaatg 688
Query: 396 aagtattcttaaatcaagaaattaattaatccttgtgcccatttgcctacctgattcaga 455
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 687 aagtattcttaaatcaagaaattaattaatccttgtacccatttgcctacctgattcaga 628
Query: 456 ctggatcaaaggtcaattaattctactttctcatctcaagtatcccagagagaactgggc 515
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 627 ctggatcaaaggtcaattaattctactttctcatctcaagtctcccagagagaactgggc 568
Query: 516 accttttaacactcattagtcctctccaggaccagtttggtatcataattaacccatgtg 575
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 567 accttttaacactcattagtcctctccaggaccagtttggtatcataattaacccatgtg 508
Query: 576 gaatacactaagctgtccgaagtcacaatggcttgcaagtctatagaggcttgctggcta 635
|||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||
Sbjct: 507 gaatacactaagctgtccaaagtcacaatggcttgcaagtctaaagaggcttgctggcta 448
Query: 636 aactgcatgctct 648
|||||||||||||
Sbjct: 447 aactgcatgctct 435
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2
Number of HSP's successfully gapped: 1
Length of query: 648
Length of database: 1048
Length adjustment: 10
Effective length of query: 638
Effective length of database: 1038
Effective search space: 662244
Effective search space used: 662244
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
