Query= MSMg01no491_j04.b1 MSMg01no491_j04.b1 CHROMAT_FILE:
MSMg01no491_j04.b1 PHD_FILE: MSMg01no491_j04.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:15:31 2005
(574 letters)
>mm_chr19_17834284_17835257
Length = 974
Score = 938 bits (485), Expect = 0.0
Identities = 536/573 (93%), Gaps = 32/573 (5%)
Strand = Plus / Minus
Query: 1 gttaacctcaaagagaaagttaatcttaaatcttttgaggtgattgttcccaggaagttg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 744 gttaacctcaaagagaaagttaatcttaaatcttttgaggtgattgttcccaggaagttg 685
Query: 61 atgtcaagcaaacttagtgaatacaaatgtatacaaaagtgaatatatatgtatatatac 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 684 atgtcaagcaaacttagtgaatacaaatgtatacaaaagtgaatatatatgtatatatac 625
Query: 121 acacatatgtgtatatatatatatacatacgtacatatgtgtgtg--tatatatatatat 178
| |||||||||||||| |||||||||||||
Sbjct: 624 a------------------------------tacatatgtgtgtgtatatatatatatat 595
Query: 179 acatatatgtgtgtatatatatcataagtatatatatatatatatatacatatatataat 238
||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||
Sbjct: 594 acatatatgtgtgtatatatatcataagtatatatatgtatatacatacatatatataat 535
Query: 239 aagatcataagaatgatcttccctgcaaataaaaaaaattatgacttaccagtattattg 298
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 534 aagatcataagaatgatcttccctgcaaataaaaaaatttatgacttaccagtattattg 475
Query: 299 ctagtggccagcataggccatcttcatttaggtacttgaaatttaatattttattaaatt 358
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 474 ctagtggccagcataggccatcttcatttaggtacttgaaatttaatattttattaaatt 415
Query: 359 tttatagttgtgatattagtatttaattaaatataagtatatttaattaagcatgaatat 418
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 414 tttatagttgtgatattagtatttaattaaatataagtatatttaattaaacatgaatat 355
Query: 419 ttgatgttagaatattaaattttcagtgtttaaagtattcagtgtttaggtgctaaagaa 478
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 354 ttgatgttagaatattaaattttcagtgtttaaagtattcagtgtttaggtgctaaagaa 295
Query: 479 atatgcagtaattttccccatcagtttaatgcctcttcctatttgattttaacagtagga 538
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 294 atatgcagtaattttccccatcagtttaatgcctcttcctatttgattttaacagtagga 235
Query: 539 ttctgatcatttttttgctcaatatttcctttc 571
||||||||||||||||||||| |||||||||||
Sbjct: 234 ttctgatcatttttttgctcattatttcctttc 202
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 32
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 574
Length of database: 974
Length adjustment: 10
Effective length of query: 564
Effective length of database: 964
Effective search space: 543696
Effective search space used: 543696
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no491_j04.g1 MSMg01no491_j04.g1 CHROMAT_FILE:
MSMg01no491_j04.g1 PHD_FILE: MSMg01no491_j04.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:15:31 2005
(447 letters)
>mm_chr19_17667715_17668560
Length = 846
Score = 534 bits (276), Expect = e-156
Identities = 386/452 (85%), Gaps = 60/452 (13%)
Strand = Plus / Plus
Query: 1 tagtggaatggcaataagataaagtgcagctaaaacccagaatatgggactgcatttttc 60
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 228 tagtggaatggcaataagataaagtgcagctaaaacccagaagatgggactgcatttttc 287
Query: 61 tagcaagcaagcaagcaagcaagcaagttagcaagcaagcaagcaagcaagcaagcaagc 120
||||||||||||||||||||||||||||||||
Sbjct: 288 ----------------------------tagcaagcaagcaagcaagcaagcaagcaagc 319
Query: 121 aagcaagcaagca--agcaagcagtagcagcagcagcagcagagagggtggctttctgca 178
||||||||||||| ||| ||||| |||||||||||||||||||||||||||||||||||
Sbjct: 320 aagcaagcaagcagtagc-agcagcagcagcagcagcagcagagagggtggctttctgca 378
Query: 179 agggagggggtgaactcaggacatagaggcatgcatgatgtatgcctcaaagtctgactt 238
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 379 agggagggggtgaactcaggacatagaggcatgcatgatgtatgcctcaaagtctgactt 438
Query: 239 tgagttccaaa--tttttttcaccaggatactcttgaacgttaaactcagatgaataatg 296
||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 439 tgagttccaaagctttt---caccaggatactcttgaacgttaaactcagatgaataatg 495
Query: 297 acaaagaaaagaaagagagagagagagagagagagagagagagagagagagagagagaga 356
|||||||||||||||| ||||||||||||||||||||||||||||||||||| ||| |||
Sbjct: 496 acaaagaaaagaaagaaagagagagagagagagagagagagagagagagagaaaga-aga 554
Query: 357 gagagagagag-agagagagagaaagaaagaagaaaggaaggcaggaaggaagaaaggaa 415
|| || || | || || || ||||||||||||| | ||| |||||||
Sbjct: 555 aag-ga-ag-gcag-ga-ag---------gaagaaaggaagg-a--aagaaagaaag--- 594
Query: 416 ggaaagaaagaaagaaagagaaggagagagag 447
||||||||||||||||||||||||||||||
Sbjct: 595 --aaagaaagaaagaaagagaaggagagagag 624
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 98
Number of extensions: 38
Number of successful extensions: 38
Number of sequences better than 10.0: 1
Number of HSP's gapped: 29
Number of HSP's successfully gapped: 1
Length of query: 447
Length of database: 846
Length adjustment: 10
Effective length of query: 437
Effective length of database: 836
Effective search space: 365332
Effective search space used: 365332
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
