BAC Information

Click to search

BAC

Clone NameMSMg01-492F09
Chromosome19 (Build37)
Map Location 8,289,906 - 8,290,538
singlet/doubletsinglet
Overlap geneD630002G06Rik
Upstream geneCox8a, Nat11, Rcor2, Mark2, AI846148, EG665419, 2700081O15Rik, Rtn3, LOC100039547, 5730596K20Rik, Hrasls3, Lgals12, Hrasls5, LOC433217, Slc22a19, LOC666543, BC014805, LOC632903, AB056442, LOC620946, LOC623030, 9530053H05Rik, EG434674, LOC100039705
Downstream geneEG633120, EG666601, LOC100039749, C730048C13Rik, LOC100040004, LOC666612, EG623402, Slc22a8, Slc22a6, Chrm1, Slc3a2, Snord22, Wdr74, 1700092M07Rik, Stx5a, LOC100039902, Nxf1, 0610006I08Rik, 1810059G22Rik, Taf6l, LOC100039957, Polr2g, Zbtb3, Ttc9c, Hnrpul2, Gng3, Bscl2, 1110067I12Rik, D19Ertd721e, AI462493, 1810009A15Rik, Ints5, Ganab, B3gat3, Rom1, Eml3, Mta2, Tut1, Eef1g, Ahnak, Scgb1a1, Asrgl1, EG621699
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-492F09.T7 (MSMg01no492_f09.b1)MSMg01-492F09.TJ (MSMg01no492_f09.g1)
ACCAG570117AG570118
length712719
length of high quality
(start - end)
632 (73 - 704)528 (74 - 601)
definitionCHROMAT_FILE: MSMg01no492_f09.b1 PHD_FILE: MSMg01no492_f09.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:16:32 2005CHROMAT_FILE: MSMg01no492_f09.g1 PHD_FILE: MSMg01no492_f09.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:16:32 2005
singlet/doubletsinglet---
BLAST hitpluralno hit data
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCTGTTTTACCTCTTCACTTGTAGACAGACTATATTGTTTATTGTATG
GATATATCACCTGTCAGTAAAAAGCCTAGGCCTATGGCTTAGGCAGGAAA
TAGGGTTGGTCCTACAAGAGAGATAGAAAGGATTCAGGCATATAGCCAGG
GTGTCGAGATCGGCCCAGAAAAAAATGTGAGGAGATAGATGAATGATACC
TGAGCACTGGTAAACAGCCATGTGGTAGAATTCAGGTTAAAATAACTGGG
TTATCTTCAGTTTCTGTATAGTCATAGAAGAGCATAGCTGTATGGTCAAG
GTATTTGTAAATAGATTTTGAGTCTCAGTCTTATTTCTATGAGCATGGGG
CTAGGAGGAAGAACCAGGTCCCAACTTCAGCAGTTTCAAATGTCTCTGTT
TCATTATATTACACTATCTAAAGTGTTATCACATATTTCCAAGAATGTCA
TTAAGTGTACTCCCCCCACCCCATTTTTGAGTATTGACACCCCTCAAAGA
AGAAACTAATATTGCTCCATCGGAGCATTATGACACACTATTTTTGAAAT
ATATAAACAAACATGTATTCACTTCAGCTAGGGAACTGAAAAGAGTCTAG
AGAAAAGATAACACAAAAGTCTAACTTGCTGAAACAATCAGTTGTATTAT
ACTACTCAAATG
CGATGATGTGNGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXAGTACTTTGATGTTAAGATATATTAGG
GACCAGTGATTTTTTGTTCCTATTATTTTTGTTGTTAGAGGTGGAATTAT
GTTTGTGTGTTTTTCTTCCTTTTGTTTGTTTTGAAAGATTAATTTATTAC
TTTTTTGGGTGTAGTTTCCCTGCTTTTGTTGGATTTTTCCTTCTCTTATC
CTCTGTAAGGCTGGATTAGTGGAAAGATATTCCTTAAATTTGATTTTGTC
TTGGAATATCTTGTTTTCTCCATCTATGGCAATTGCAAATCTTGCTGGAT
ATATTATCCTGGGCTGGTTTTTTTTTTTTTTTTTTTTAGGGTCTGTATTT
CATCTGCCCACAATTGTCAGGGTTTTAGAATCTCTATAGAGAAGTCTGTT
GTAACTCTGATAGGTCTGCCTTTATTTATTACTTGACTTTTTTTCCTTAC
TGCTTTCAATATTCTTTCTTTGTTCTGTGTATTTTGTGTTTTAATTATTA
TATGACAAGAGGAATTTCTTTTCTGGTTCTCTGTGTTTGGTTTTTGGTAG
GCTTCTTCTACATTTATGGACATTTCTTTTTGTCTGTTATGGAAGTTTTC
TTCTATAATTTTGTTGAAAATGCTTGCTGGCTCTTTGAGTTGGGAATCTT
CACTCTTCTTTATTCTAAN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no492_f09.b1 MSMg01no492_f09.b1 CHROMAT_FILE:
MSMg01no492_f09.b1 PHD_FILE: MSMg01no492_f09.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:16:32 2005
         (632 letters)



>mm_chr19_8289707_8290738
          Length = 1032

 Score = 1021 bits (528), Expect = 0.0
 Identities = 609/636 (95%), Gaps = 7/636 (1%)
 Strand = Plus / Plus

                                                                       
Query: 1   gtagacagactatattgtttattgtatggatatatcacctgtcagt-aaaaagccta-gg 58
           |||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||
Sbjct: 200 gtagacagactatattgtttattgtatggatatatcacctgtcagttaaaaagcctatgg 259

                                                                       
Query: 59  cctatggcttaggcaggaaatagggttggtcctacaagagagatagaaaggattcaggca 118
           ||||||| ||||||||||||||||||||||||||| ||||||||||||||||||  ||||
Sbjct: 260 cctatggtttaggcaggaaatagggttggtcctacgagagagatagaaaggatttgggca 319

                                                                       
Query: 119 tatagccagggtgtcgag-atcggcccagaaaaaaatgtgaggagatagatgaatgatac 177
           |||||||||||||| | | |||||||||||||||||||||||||||||||||||||||||
Sbjct: 320 tatagccagggtgt-g-gtatcggcccagaaaaaaatgtgaggagatagatgaatgatac 377

                                                                       
Query: 178 ctgagcactggtaaacagccatgtggtagaattcaggttaaaataactgggttatcttca 237
           ||||||||||||||||||||| |||||||||||||| ||||||||||| |||||||||  
Sbjct: 378 ctgagcactggtaaacagccacgtggtagaattcagattaaaataactaggttatctttg 437

                                                                       
Query: 238 gtttctgtatagtcatagaagagcatagctgtatggtcaaggtatttgtaaatagatttt 297
           | | | ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 438 ggtacagtatagtcatagaagagcatagctgtatggtcaaggtatttgtaaatagatttt 497

                                                                       
Query: 298 gagtctcagtcttatttctatgagcatggggctaggaggaagaaccaggtcccaacttca 357
           ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 498 gagtctcagtcttatttctatgagcatggggctaggaggaagaaccaggccccaacttca 557

                                                                       
Query: 358 gcagtttcaaatgtctctgtttcattatattacactatctaaagtgttatcacatatttc 417
           |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 558 gcagtttctaatgtctctgtttcattatattacactatctaaagtgttatcacatatttc 617

                                                                       
Query: 418 caagaa-tgtcattaagtgtactccccccaccccatttttgagtattgacacccctcaaa 476
           ||| || ||||||||||||||||||||||||||| ||||||||||||||||| |||||||
Sbjct: 618 caa-aactgtcattaagtgtactccccccaccccgtttttgagtattgacactcctcaaa 676

                                                                       
Query: 477 gaagaaactaatattgctccatcggagcattatgacacactatttttgaaatatataaac 536
           ||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||
Sbjct: 677 gaagaaactaatattgctccatcggagcattatgagacactatttttgaaagatataaac 736

                                                                       
Query: 537 aaacatgtattcacttcagctagggaactgaaaagagtctagagaaaagataacacaaaa 596
           ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 737 aaacatgtattcacttcagctagagaactgaaaagagtctagagaaaagataacacaaaa 796

                                               
Query: 597 gtctaacttgctgaaacaatcagttgtattatacta 632
           ||||||||||||||||||||||||| ||||||||||
Sbjct: 797 gtctaacttgctgaaacaatcagttttattatacta 832


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 632
Length of database: 1032
Length adjustment: 10
Effective length of query: 622
Effective length of database: 1022
Effective search space:   635684
Effective search space used:   635684
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)