BAC Information

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BAC

Clone NameMSMg01-492G06
Chromosome19 (Build37)
Map Location 11,364,284 - 11,364,471
singlet/doubletsinglet
Overlap genenone
Upstream geneSyt7, Gm705, 4930579J09Rik, 0610038F07Rik, 5730453I16Rik, 2810441K11Rik, Tmem138, Cybasc3, Dak, Ddb1, Vwce, Pga5, 2210404E10Rik, Vps37c, Cd5, Cd6, Slc15a3, Tmem132a, Tmem109, Prpf19, Zp1, Gpr44, Ccdc86, Ms4a10, E530011F12Rik, 5033428B15Rik, AW112010, Ms4a8a, Gm336, LOC624395, 1700025F22Rik, Ms4a13, Ms4a12, Ms4a1, Ms4a5
Downstream geneGm1276, Ms4a7, Ms4a4a, LOC435588, Ms4a4c, LOC433221, Ms4a4b, Ms4a6c, EG666926, Ms4a6b, Ms4a4d, LOC100040454, Ms4a6d, Ms4a2, Ms4a3, Plac1l, Oosp1, Gm97, Gif, EG666958, Mrpl16, Stx3, Olfr1417, Olfr1418, Olfr1419, EG622845, EG666985, Olfr1420, AV312086, Osbp, GA_x5J8B7W6KF8-6942124-6941700, Olfr1422-ps1, Olfr1423, Olfr1424, Olfr1425, Olfr1426, Olfr1427, Olfr1428, Olfr76, Olfr1555-ps1, Olfr1430-ps1, Olfr1431, Olfr1429-ps1, Olfr262, Olfr232, Olfr1433, Olfr1435-ps1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-492G06.T7 (MSMg01no492_g06.b1)MSMg01-492G06.TJ (MSMg01no492_g06.g1)
ACCAG570157AG570158
length7071,265
length of high quality
(start - end)
191 (118 - 308)---
definitionCHROMAT_FILE: MSMg01no492_g06.b1 PHD_FILE: MSMg01no492_g06.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:16:36 2005CHROMAT_FILE: MSMg01no492_g06.g1 PHD_FILE: MSMg01no492_g06.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:16:36 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
ATXXXXXXXXXXXXXXXXXXXXXXXXXXNATTTCGTACTTGGGCGGNAAT
CCNGTTTTTCTNGACCTGAGATNAAAGNGGGATCCTTGGNAAGGACAAAT
AACATTCTAAAGTTGCAATGGCTAAGTATGGTAAGATATTGTAAATCTGA
AAACATTGAACACTGAATTCTAATGAGACTACTATCTATATTCAGGGGAA
GAAGTCTCTCTGTGCCATCAGGTCCTGACTATCTGTGAATTTTCCCTGTT
GCCTGAAGAGACTTCAATGGCCTCATCTGAAGGAGTTGCTATGGCAGATG
ATACTTTTTTTTTTTTAAGCACATCACCGTCCCNTTTCTTCTTTTTATGG
TTTTGTATGATTTTTTTAGTGTTTCTTTTTTTTAAGTAGATATTTTCTTC
ATTCACATTTCATATGCTATCTCCTTTCCTAGTTTCCTCTCCAAAAGTCC
CCTATACCCTCACCAATCCCTGTTCCCCAACCTACTCACTCCTGCTTCTT
ATCCCTGGCATTCCCCTATACTGGGGCACATAATCTTCACAAGGGTCTCT
CCTACTATTCACGGCATACTATGTCATCATATGCCATTTATGTTGTTTCG
TATATGAGCCTTCCGGCCGCACCGTTTTTTTTTTATTGCTGCCCTCCCCA
TATGTGTGCAGACCACTTTCTCTCCTTGTGTACTCTCCCTAACCCCTTTT
TTGCCGG
ACTACTTGGGGTAAGGCTCTTGGGNNCGGCCCCGCCTTGGNCCCTTTCAG
NACATCTATAGGGGTNGNNACACTTANTANNNNAAGNGTCNCCNTTCGNG
NNNAATTCANNAANNAATTANNNNGAANNCAAATTNNCAGNNGGNNAAAT
CCCCTTAANGAAAAATGTNCTATTTGTATACTTGNATTAAAANNAAAACC
TCTTGGNNCCATTTANNNNAATCCTCTGGGNANCAAATNCCTTGTTTTCC
TTCCNGTCTCTTTGTTNNAAAANGCANNAAAGCTCCTTCCCANTAAATAA
GTCTTCANCAATTGTTCCACTCCTATTTTGAACCCCCCCCCAANCCCATT
TGGTTAACATGCAACAAAAGAACCCCTTCTCCNTCGGNTATTATTGGTGA
AGCATTCCCCTCGAATAATGNCAAAACTCCCTCAATTATATTTTAANCCC
ATAATCCTCCTCCCCCCAATTGTTATCGCACAAAAAGACNCCAATATAAT
TGGTATATTGTTTACCCCTTGGGCACTTATCTATCCACCTAATTAATTTA
ATAACTCTCCTTTCCGCCCTTACTGTATTTTCTCTTCCGATTAANGTTTC
TTATTCACGGTNTCTCTCAATCCTTCTTTCCCTCCTTTTACTTTTCACTT
TCACCCCAGGTGGTCTTCCNTTTTTTCACACTCATTCTCTCAAATCAACC
TTCTCCTCCTATCTTTGCGTCTATTCTCTTCTCCTTTTCTTCCTACCTAG
CGTGTGTTGTGGTGGGGCCTGGGGTGTTTTCTACAATTCTTTCTTCTCTC
ACTATCTTTTCCCTGATCGNAGTNTCCAGCCGATAGATCGTCGTTCTAGT
ATAATCNCTCTTTTTGCTNTNTTNTTTAATTTCTATNNTTTCCCNCCTCT
TATTCGTATTTATCTATAAAATATTCTTAAAAGATTCTATNTTTCTTCCT
CAGCCNTCTCCNCCATTCTTNNNTTTCNCNNNCNNCTTGNNCCGCGCGGG
ATGTGGCGTGGGGCTTTTTCTTCCCCCTTTCCCTTTCTTCCCCTACTTCC
TATCCATTTGCGCCTGCTGGTTGTGGGGGTTGTATGTTCATNTTCNCTAT
ATATCTATATTTCTTACACNCCTTCCCTTTTCTCTTCTCCCTTATTTATC
CTCTCACCTCTTCTCTCNCTCTTTCTACCTCTTCGTCTTTCCTCTTCTCC
CNCCCTCCTCTCTTCCACCATCATATATCCCNCTCTTCTCGCTCGTCTAT
TGCTGATGTGTGGTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no492_g06.b1 MSMg01no492_g06.b1 CHROMAT_FILE:
MSMg01no492_g06.b1 PHD_FILE: MSMg01no492_g06.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:16:36 2005
         (191 letters)



>mm_chr19_11364084_11364674
          Length = 591

 Score =  325 bits (168), Expect = 1e-93
 Identities = 183/188 (97%)
 Strand = Plus / Plus

                                                                       
Query: 1   atggctaagtatggtaagatattgtaaatctgaaaacattgaacactgaattctaatgag 60
           |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 201 atggctaagtatggtaagatattgcaaatctgaaaacattgaacactgaattctaatgag 260

                                                                       
Query: 61  actactatctatattcaggggaagaagtctctctgtgccatcaggtcctgactatctgtg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 actactatctatattcaggggaagaagtctctctgtgccatcaggtcctgactatctgtg 320

                                                                       
Query: 121 aattttccctgttgcctgaagagacttcaatggcctcatctgaaggagttgctatggcag 180
           |||   |||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 321 aataaaccctgttgcctgaagagacttcaatggcctcatctgaaggagttgctatgtcag 380

                   
Query: 181 atgatact 188
           ||||||||
Sbjct: 381 atgatact 388


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 9
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 191
Length of database: 591
Length adjustment: 8
Effective length of query: 183
Effective length of database: 583
Effective search space:   106689
Effective search space used:   106689
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)