BAC Information

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BAC

Clone NameMSMg01-494H18
Chromosome19 (Build37)
Map Location 59,630,727 - 59,805,013
singlet/doubletdoublet
Overlap genenone
Upstream genePnlip, Pnliprp1, Pnliprp2, 1700019N19Rik, Hspa12a, 6430537H07Rik, 4930506M07Rik, LOC668626, Vax1, LOC668627, Kcnk18, Slc18a2, Pdzd8, LOC100034727, LOC100043073, Emx2os, Emx2
Downstream geneRab11fip2, LOC100043087, LOC100043091, LOC100043093, D19Ertd737e, 4933412A08Rik, Prlhr, 2700078E11Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-494H18.T7 (MSMg01no494_h18.b1)MSMg01-494H18.TJ (MSMg01no494_h18.g1)
ACCAG571753AG571754
length752753
length of high quality
(start - end)		681 (55 - 735)593 (62 - 654)
definitionCHROMAT_FILE: MSMg01no494_h18.b1 PHD_FILE: MSMg01no494_h18.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:19:20 2005CHROMAT_FILE: MSMg01no494_h18.g1 PHD_FILE: MSMg01no494_h18.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:19:20 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(59,804,536 - 59,805,013)(59,630,727 - 59,631,319)
sequence
GCGCTATACGACTCACTATTTCGAGAGGATGCGCGGAATTCATGACTATT
CAGTCATAGGGAGTTAGCCACACCTGGAACGCAATTTTCATGGAAGAACC
CATGTCTTCTGAGGAGAAGCATTGTCCACTTATGCAGGTACTCTTGTTCA
AATGCCTTCTAAGACTCTTTAAACTCACAGAATTAAGTTAAGTGACAAGG
TAAAAGAGATACCATCAGACTTCAGTAGCTTCAATCCTGGGAGTGCTTTA
TCAACCAGACACAAGCCAGAGTTGTCTGGGAAGAGCAACCCCAGTGGAGA
AAACGACCCATCAGACTGTCCCATAGAAAGACTATAGGACATGTTCTGCA
TTGATGATTAATTTGGATGGGCCCAGGCCATTGAAAGCACTGTCATTTTG
GGGCTGTGGTCCCGGGTTCCATAAAAAAACAAAAACAAAAACAAAAAACA
AATCAAGGCGAGTAAGTCATGGGGACCAAGCCTGTAAACAGCATTCCTCC
ATGGCCTCTGCTTCAGTTTCTGCTTCCAGATTCGAGCTCTGACTTCTACC
TTCAGAGGAAGACTGTAGACTATAAGGTAAAATAAACTTTCAAATGCCGA
CTTGCCAAGCAAACTACTATAGCAGCTGCATGAAGGTTAGAGTATATCCT
CTCCCTCTCCCTCTCCCTCTCCCTCTCTCTCTCTCTCTCTTTCTCTCTCT
CTCTCTCTCTCTCCCTTGTGCCCGNCCTCTCTCTCTTTCTTATAACACAC
AA

XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXTTGTCTTTCTTCAGCTGCCTTGGCTTCCTACCCTTCCCT
TGGTCTCCAATTACGTTCCATGATGCCCACGGCCTGAGATTCAGGACATA
GACGCTTTGTGCTCTTGGCTCTCTTGTTTTTAGTCTTCTCTCTCTCCTAC
CCTGCCTCTGTCTCCTCTCTGTGCAGTGTCTGGGCACTCTAAGATCTTCT
TGGTACTGAAGCCTGTGCTCCAGCTGCTCCCTCTGTCTGGAAAGTTCCTT
CTGCTGTTCTCTGTATGGTGCTATGGGACTCCTATGGGTGCTGTTGGACC
CCCCACGCTGTGTATGTGATACTCTAAACTCACTGCCTTTTGTCCCATCA
TTTTTCTATGGCTTGGGGCCAATGTCAGATGTCTTATTCTTATTCTAAAT
CCCCAAAACAAGCTGTTTCTGGCAGCTTCAGGCCCTGCTGAGGCAAACAC
CTGTGGAGAGACAATGTGGTTTTGGCTGTAGCTCAGGCCATAGGCCAGGC
ACGGGAGTATGATTCTCTGTCCTTGACCCTAAATACATCTAGAAACCTTA
CTTTGATCTCCAGAAGCCCCTGATTACAGCTTTATGAATGTATTTTTTTT
TTGAAATTAGGAATATACAAGCTATCAAAAAAGATGTGCCCATGACGCTA
GCATAAAGGGTTGGCTACTCTCTGTAGAATTTGCTTAAACAGTCTGGCTT
TCT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no494_h18.b1 MSMg01no494_h18.b1 CHROMAT_FILE:
MSMg01no494_h18.b1 PHD_FILE: MSMg01no494_h18.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:19:20 2005
         (681 letters)



>mm_chr19_59804536_59805616
          Length = 1081

 Score =  924 bits (478), Expect = 0.0
 Identities = 478/478 (100%)
 Strand = Plus / Minus

                                                                       
Query: 1   catagggagttagccacacctggaacgcaattttcatggaagaacccatgtcttctgagg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 478 catagggagttagccacacctggaacgcaattttcatggaagaacccatgtcttctgagg 419

                                                                       
Query: 61  agaagcattgtccacttatgcaggtactcttgttcaaatgccttctaagactctttaaac 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 418 agaagcattgtccacttatgcaggtactcttgttcaaatgccttctaagactctttaaac 359

                                                                       
Query: 121 tcacagaattaagttaagtgacaaggtaaaagagataccatcagacttcagtagcttcaa 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 358 tcacagaattaagttaagtgacaaggtaaaagagataccatcagacttcagtagcttcaa 299

                                                                       
Query: 181 tcctgggagtgctttatcaaccagacacaagccagagttgtctgggaagagcaaccccag 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 298 tcctgggagtgctttatcaaccagacacaagccagagttgtctgggaagagcaaccccag 239

                                                                       
Query: 241 tggagaaaacgacccatcagactgtcccatagaaagactataggacatgttctgcattga 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 238 tggagaaaacgacccatcagactgtcccatagaaagactataggacatgttctgcattga 179

                                                                       
Query: 301 tgattaatttggatgggcccaggccattgaaagcactgtcattttggggctgtggtcccg 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 178 tgattaatttggatgggcccaggccattgaaagcactgtcattttggggctgtggtcccg 119

                                                                       
Query: 361 ggttccataaaaaaacaaaaacaaaaacaaaaaacaaatcaaggcgagtaagtcatgggg 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 118 ggttccataaaaaaacaaaaacaaaaacaaaaaacaaatcaaggcgagtaagtcatgggg 59

                                                                     
Query: 421 accaagcctgtaaacagcattcctccatggcctctgcttcagtttctgcttccagatt 478
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 58  accaagcctgtaaacagcattcctccatggcctctgcttcagtttctgcttccagatt 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 681
Length of database: 1081
Length adjustment: 10
Effective length of query: 671
Effective length of database: 1071
Effective search space:   718641
Effective search space used:   718641
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no494_h18.g1 MSMg01no494_h18.g1 CHROMAT_FILE:
MSMg01no494_h18.g1 PHD_FILE: MSMg01no494_h18.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:19:20 2005
         (593 letters)



>mm_chr19_59630527_59631519
          Length = 993

 Score = 1147 bits (593), Expect = 0.0
 Identities = 593/593 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   ttgtctttcttcagctgccttggcttcctacccttcccttggtctccaattacgttccat 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ttgtctttcttcagctgccttggcttcctacccttcccttggtctccaattacgttccat 260

                                                                       
Query: 61  gatgcccacggcctgagattcaggacatagacgctttgtgctcttggctctcttgttttt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gatgcccacggcctgagattcaggacatagacgctttgtgctcttggctctcttgttttt 320

                                                                       
Query: 121 agtcttctctctctcctaccctgcctctgtctcctctctgtgcagtgtctgggcactcta 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 agtcttctctctctcctaccctgcctctgtctcctctctgtgcagtgtctgggcactcta 380

                                                                       
Query: 181 agatcttcttggtactgaagcctgtgctccagctgctccctctgtctggaaagttccttc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 agatcttcttggtactgaagcctgtgctccagctgctccctctgtctggaaagttccttc 440

                                                                       
Query: 241 tgctgttctctgtatggtgctatgggactcctatgggtgctgttggaccccccacgctgt 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tgctgttctctgtatggtgctatgggactcctatgggtgctgttggaccccccacgctgt 500

                                                                       
Query: 301 gtatgtgatactctaaactcactgccttttgtcccatcatttttctatggcttggggcca 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 gtatgtgatactctaaactcactgccttttgtcccatcatttttctatggcttggggcca 560

                                                                       
Query: 361 atgtcagatgtcttattcttattctaaatccccaaaacaagctgtttctggcagcttcag 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 atgtcagatgtcttattcttattctaaatccccaaaacaagctgtttctggcagcttcag 620

                                                                       
Query: 421 gccctgctgaggcaaacacctgtggagagacaatgtggttttggctgtagctcaggccat 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 gccctgctgaggcaaacacctgtggagagacaatgtggttttggctgtagctcaggccat 680

                                                                       
Query: 481 aggccaggcacgggagtatgattctctgtccttgaccctaaatacatctagaaaccttac 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 aggccaggcacgggagtatgattctctgtccttgaccctaaatacatctagaaaccttac 740

                                                                
Query: 541 tttgatctccagaagcccctgattacagctttatgaatgtattttttttttga 593
           |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 tttgatctccagaagcccctgattacagctttatgaatgtattttttttttga 793


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 593
Length of database: 993
Length adjustment: 10
Effective length of query: 583
Effective length of database: 983
Effective search space:   573089
Effective search space used:   573089
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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