Query= MSMg01no495_a22.b1 MSMg01no495_a22.b1 CHROMAT_FILE:
MSMg01no495_a22.b1 PHD_FILE: MSMg01no495_a22.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:20:03 2005
(616 letters)
>mm_chr19_24330131_24331143
Length = 1013
Score = 1160 bits (600), Expect = 0.0
Identities = 608/612 (99%), Gaps = 3/612 (0%)
Strand = Plus / Minus
Query: 5 gaattcactcctatcctagacctttgggtacagaatttagcattataatacatagcaaca 64
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 888 gaattcactcctatcctagacctttgggtacagaatttagcattataatacatagcaaca 829
Query: 65 gaccaaacctcaacaggtttgacttaactagtgatggtactggagtagacactgaggcct 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 828 gaccaaacctcaacaggtttgacttaactagtgatggtactggagtagacactgaggcct 769
Query: 125 tgattaagggcatggaatgtgtacaggtacttacattatttttgatattgtttttcttca 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 768 tgattaagggcatggaatgtgtacaggtacttacattatttttgatattgtttttcttca 709
Query: 185 ttcccaggaacttaatttagggtgtcacacattctaggtaaacctacctctgagctatac 244
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 708 ttcccaggaacttaatttagggtgtcacacattctaggtaaacctacctctgagctatac 649
Query: 245 tttcagtccagcctgcatctgctaaagacaaaatgtaaaacccaatgtcccatctcccct 304
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 648 tttcagtccagcctgcatctgctaaagacaaaatgtaaaacccaatgtcccatctcccct 589
Query: 305 gatcgtgttgatgaagaaatagaatgtacacgaataggtttattgaactgtttattagaa 364
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 588 gatcgtgttgatgaagaaatagaatgtacacgaataggtttattgaactgtttattagaa 529
Query: 365 tgttgagaaaaacacccatacccactggcaacattgcctcccaaggactccttcctatct 424
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 528 tgttgagaaaaacacccatacccactggcgacattgcctcccaaggactccttcctatct 469
Query: 425 aagagaagagtcaggcataggaggccactgtaagcacaaaacttagtttacaccaggcct 484
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 468 aagagaagagtcaggcataggaggccactgtaagcacaaaacttagtttacaccaggcct 409
Query: 485 ttgcagaccactggagtctctatgctctgccttggcatttggaagcccacttgatgttgt 544
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 408 ttgcagaccactggagtctctatgctctgccttggcatttggaagcccacttga---tgt 352
Query: 545 tgttactgtttatctctttcaaaagaatgtgtttgaagctggacagtggtgattcctgcc 604
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 351 tgttactgtttatctctttcaaaagaatgtgtttgaagctggacagtggtgattcctgcc 292
Query: 605 tttaatcccaga 616
||||||||||||
Sbjct: 291 tttaatcccaga 280
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 33
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 616
Length of database: 1013
Length adjustment: 10
Effective length of query: 606
Effective length of database: 1003
Effective search space: 607818
Effective search space used: 607818
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no495_a22.g1 MSMg01no495_a22.g1 CHROMAT_FILE:
MSMg01no495_a22.g1 PHD_FILE: MSMg01no495_a22.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:20:03 2005
(564 letters)
>mm_chr19_24137145_24138107
Length = 963
Score = 1033 bits (534), Expect = 0.0
Identities = 549/554 (99%), Gaps = 2/554 (0%)
Strand = Plus / Plus
Query: 11 aaaaaaataagagaaaagaaaaagaaagaaagaaaaaaaaaaaacagaagccattttaaa 70
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 212 aaaaaaataagagaaaagaaaaagaaagaaa-aaaaaaaaaaaacagaagccattttaaa 270
Query: 71 agttgagggagttttcccttattttgttgagacagagtttcactgtgtagccttggctgg 130
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 271 agttgagggagttttgccttattttgttgagacagagtttcactgtgtagccttggctgg 330
Query: 131 cctagacttgataggtagaccaggctggcctggaaatcacagaagtacacctgcctctgc 190
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 331 cctagacttgataggtagaccaggctggcctggaaatcacagaagtacacctgcctctgc 390
Query: 191 ctcccgagtgctgggattaaaggtgtatgtcaccatggctggccaaaagttatttggctt 250
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 391 ctcccgagtgctgggattaaaggtgtatgtcaccatggctggccaaaagttatttggctt 450
Query: 251 tttgtttttatttttaaaaatcaagattcaagtcaattcttaagttaaaaaaaaaaaaat 310
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 451 tttgtttttatttttaaaaatcaagattcaagtcaattcttaagttaaaaaaaaaaaa-t 509
Query: 311 caatccaaacttgaatgagaaattcagcagagacagacttagaaggaaaaaaaaatgtag 370
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 510 caatccaaacttgaatgagaaattcagcagagacagaattagaaggaaaaaaaaatgtag 569
Query: 371 aaattaaaagttcaagtaagccaggcatggtggtgcacacctttagtctcagtactcagg 430
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 570 aaattaaaagttcaagtaagccaggcatggtggtgcacacctttagtctcagtactcagg 629
Query: 431 aggcagagacagtggatatctaaattagaggccagcctggtctacagatcgagttctgga 490
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 630 aggcagagacagtggatatctaaattagaggccagcctggtctacagatcgagttctgga 689
Query: 491 acagccagggctacacagagaaactctgtttcaaaaaacaaacaaaatccccactaatgt 550
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 690 acagccagggctacacagagaaactctgtttcaaaaaacaaacaaaatcccaactaatgt 749
Query: 551 aacaatagaacaga 564
||||||||||||||
Sbjct: 750 aacaatagaacaga 763
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 40
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 564
Length of database: 963
Length adjustment: 10
Effective length of query: 554
Effective length of database: 953
Effective search space: 527962
Effective search space used: 527962
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
