Query= MSMg01no496_g10.b1 MSMg01no496_g10.b1 CHROMAT_FILE:
MSMg01no496_g10.b1 PHD_FILE: MSMg01no496_g10.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:21:43 2005
(576 letters)
>mm_chr19_45155306_45156276
Length = 971
Score = 1044 bits (540), Expect = 0.0
Identities = 562/572 (98%), Gaps = 5/572 (0%)
Strand = Plus / Minus
Query: 5 gaattcatttatccttatttttattttatgtgcgttggtgttttgcctgcatgtatgtct 64
||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 939 gaattaatttatttttatttttattttatgtgcgttggtgttttgcctgcatgtatgtct 880
Query: 65 atggagttacagacagttgtaaactgccatgtgaacgctgggaatttaaccctggtcctc 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 879 atggagttacagacagttgtaaactgccatgtgaacgctgggaatttaaccctggtcctc 820
Query: 125 tggaggagtaactagtgctcttaatcgctgagccatctctccagtcccccttgaggggat 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 819 tggaggagtaactagtgctcttaatcgctgagccatctctccagtcccccttgaggggat 760
Query: 185 ctttttacaagggtttttccaatcaaacaaaaactctcaaggccccttagcccaggcccg 244
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 759 ctttttacaagggtttttccaatcaaacaaaaactctcaaggccccttagcccaggcccg 700
Query: 245 cctgccactaccagaagtatccaccagatggcagcctttccccagttcctaagaattgcc 304
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 699 cctgccactaccagaagtatccaccagatggcagcctttccccagttcctaagaattgcc 640
Query: 305 agagaggtcgccttttccccactattcttagtggttgggggcatagactcagcccctcag 364
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 639 agagaggtcgccttttccccactattcttagtggttgggggcatagactcagcccctcag 580
Query: 365 tatggcgagtgcatccttggtccccaaagtctgcaattttgacctctttaaaatcaaatc 424
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 579 tatggcgagtgcatccttggtccccaaagtctgcaattttgacctctttaaaatcaaatc 520
Query: 425 cttcctctcctctcaatcttcaattctccttctactggatggtcagactccccctggggt 484
|| ||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 519 ct-----tcctctcaatcttcaattctccttctactggatgggcagactccccctggggt 465
Query: 485 cttcggttctgttcagtcctcagatcgacccctatggggcggacgtgacttggctacgcc 544
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 464 cttcggttctgttcagtcctcagatcgacccctatggggcggacgtgacttggctaagcc 405
Query: 545 ccacaccctcgattctgaccagcgcggatgaa 576
||||||||||||||||||||||||||||||||
Sbjct: 404 ccacaccctcgattctgaccagcgcggatgaa 373
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 3
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 576
Length of database: 971
Length adjustment: 10
Effective length of query: 566
Effective length of database: 961
Effective search space: 543926
Effective search space used: 543926
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no496_g10.g1 MSMg01no496_g10.g1 CHROMAT_FILE:
MSMg01no496_g10.g1 PHD_FILE: MSMg01no496_g10.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:21:43 2005
(239 letters)
>mm_chr19_45022621_45023258
Length = 638
Score = 447 bits (231), Expect = e-130
Identities = 237/239 (99%), Gaps = 1/239 (0%)
Strand = Plus / Plus
Query: 1 tctcttcagaccagagatccacttgcctctgcctctagaatgctgggaccaaagtcatgc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tctcttcagaccagagatccacttgcctctgcctctagaatgctgggaccaaagtcatgc 260
Query: 61 agcaccatacctggctaaaatactaagtcagtcttacagttggaaattaacactttacct 120
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 261 agcaccatacctggctaaaatactaagtcagtcgtacagttggaaattaacactttacct 320
Query: 121 gctgagccatctcctcagcctgagttaatccatctttaaagtgtataatatgctaaaaat 180
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 321 gctgagccatctcctcagcctgagttaatccatctttaaagtgtataatatgctaaaa-t 379
Query: 181 tttcactgggcctgtcctgttagcaaatgtcattaattccagcgcccgggaggcagaga 239
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 380 tttcactgggcctgtcctgttagcaaatgtcattaattccagcgcccgggaggcagaga 438
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 239
Length of database: 638
Length adjustment: 9
Effective length of query: 230
Effective length of database: 629
Effective search space: 144670
Effective search space used: 144670
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
