Query= MSMg01no498_k22.b1 MSMg01no498_k22.b1 CHROMAT_FILE:
MSMg01no498_k22.b1 PHD_FILE: MSMg01no498_k22.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:24:49 2005
(502 letters)
>mm_chr19_43031645_43032546
Length = 902
Score = 656 bits (339), Expect = 0.0
Identities = 348/351 (99%), Gaps = 1/351 (0%)
Strand = Plus / Minus
Query: 5 gaattcctgattattttgagtttctagttttgttcataagagccaattgcattcttcaac 64
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 367 gaattcctgattattttgagtttctagttttgttcataagagccaattgcattcttcaac 308
Query: 65 caatgaaagtctgtgcaggaaattctggccagggcgtcagacttcctaccatttctaccg 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 307 caatgaaagtctgtgcaggaaattctggccagggcgtcagacttcctaccatttctaccg 248
Query: 125 gttgctcttttagttgttgttccagagaacagttctctactcatcttttttt-ttaatta 183
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 247 gttgctcttttagttgttgttccagagaacagttctctactcatctttttttcttaatta 188
Query: 184 ggtattttcttcatttacatttccaatgctatcccaaaagtcccccataccctctccccc 243
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 187 ggtattttcttcatttacatttccaatgctatcccaaaagtcccccataccctctccccc 128
Query: 244 cacccctgcaactcccctacccacccattcccacttcttggccctggcattcccaggcat 303
|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 127 cacccccacaactcccctacccacccattcccacttcttggccctggcattcccaggcat 68
Query: 304 ataaagtttgcaagaccaaggggcctctcttcccaatgatggccgactagg 354
|||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 67 ataaagtttgcaagaccaaggggcctctcttcccaatgatggccgactagg 17
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 502
Length of database: 902
Length adjustment: 10
Effective length of query: 492
Effective length of database: 892
Effective search space: 438864
Effective search space used: 438864
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no498_k22.g1 MSMg01no498_k22.g1 CHROMAT_FILE:
MSMg01no498_k22.g1 PHD_FILE: MSMg01no498_k22.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:24:49 2005
(473 letters)
>mm_chr19_42905401_42906271
Length = 871
Score = 845 bits (437), Expect = 0.0
Identities = 464/473 (98%), Gaps = 2/473 (0%)
Strand = Plus / Plus
Query: 1 ttatcgtcaataaatgcaaatgaagagccatagagttatctcagtaactaccttgggcat 60
||||||||||||||||||||||| |||||| ||||||||||||||||||||||| |||||
Sbjct: 201 ttatcgtcaataaatgcaaatgaggagccacagagttatctcagtaactaccttcggcat 260
Query: 61 tttcctgtacagccacctgaatagtaaaaatccatcattaaacactaaagagaatcatta 120
|||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||
Sbjct: 261 tttcctgtacagccacctgaatagtaaaaatccatcattaaacact-aagagagtcatta 319
Query: 121 tagttttacagggtttgcataagataatatcagttgatggagaagttgaaaggaatgtca 180
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 320 tagttttacagggtttgcataagataatagcagttgatggagaagttgaaaggaatgtca 379
Query: 181 aatttgtcataggaacttactatgaaatggaatgcaaattctttaaactgtgttaaaatt 240
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 380 aatttgtcataggaacctactatgaaatggaatgcaaattctttaaactgtgttaaaatt 439
Query: 241 tcaaagttcaaatgaaagtccaattttagaaatcttcaggctggaaaatagcttattgaa 300
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 440 tcaaagttcaaaggaaagtccaattttagaaatcttcaggctggaaaatagcttattgaa 499
Query: 301 tctggaatgaagacattactgtaaagccattgcatcgcttgataatgatgacatttccag 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 500 tctggaatgaagacattactgtaaagccattgcatcgcttgataatgatgacatttccag 559
Query: 361 aagcacagtgatataagccttaaactctacaaagtcacacttttctcctaaagtactgtg 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 560 aagcacagtgatataagccttaaactctacaaagtcacacttttctcctaaagtactgtg 619
Query: 421 atgggacatttcttcctaggttcactttccatgccattctgaactttttgttt 473
|||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 620 atgggacatttcttcctaggttcactttccatgccattctgaactttt-gttt 671
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 473
Length of database: 871
Length adjustment: 10
Effective length of query: 463
Effective length of database: 861
Effective search space: 398643
Effective search space used: 398643
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
