Query= MSMg01no499_a17.b1 MSMg01no499_a17.b1 CHROMAT_FILE:
MSMg01no499_a17.b1 PHD_FILE: MSMg01no499_a17.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:25:20 2005
(567 letters)
>mm_chr19_43606244_43607210
Length = 967
Score = 917 bits (474), Expect = 0.0
Identities = 551/594 (92%), Gaps = 32/594 (5%)
Strand = Plus / Minus
Query: 1 caagaagcctctgggagctggaactagcaatgtgggagggttatgaacagttttcatcct 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 646 caagaagcctctgggagctggaactagcaatgtgggagggttatgaacagttttcatcct 587
Query: 61 ggatggaaaagtccagggagctgttacacaacagt-caaacacagctaacactgctgtat 119
||||||||||||||||||||||||||||||||||| ||||||| ||||||||| ||||||
Sbjct: 586 ggatggaaaagtccagggagctgttacacaacagtgcaaacacggctaacactactgtat 527
Query: 120 agtgaacttaaaatggtcaagatagtaagtgttacttaaaaaaa-----------atggc 168
||||||||||||||||||||||| ||||||||||||||||| | |||
Sbjct: 526 agtgaacttaaaatggtcaagat----agtgttacttaaaaaaaaaaacaaaaacacggc 471
Query: 169 aaaagagctaattttgtaatt-atgtaactttaaagagcttgtctttaatcaatcaacaa 227
||||||||||||||||| ||| |||||| |||||||||||||||||||||||||||||||
Sbjct: 470 aaaagagctaattttgt-attaatgtaattttaaagagcttgtctttaatcaatcaacaa 412
Query: 228 atatttatgttccaattagtcattaaatacc--------------ttttttttttttttt 273
|||||||||||| |||||| || ||||||| |||||||||||||||
Sbjct: 411 atatttatgttcaaattaggcaccaaataccttttttttttttttttttttttttttttt 352
Query: 274 gtcatggaaaatgcaaagagttaggtctaatggttttgggtcttaagaaactagcaatca 333
||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 351 gtcatggaacatgcagagagttaggtctaatggttttgggtcttaagaaactagcaatca 292
Query: 334 agttagggagatagttaaggttacatgacaattaactagcaatccaggcaatgtaaagac 393
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 291 agttagggagatagttaaggttacatgacaattaactagcaatccaggcaatgtaaagac 232
Query: 394 accagatgagaagaagcagaacgtcttatatgtttagaacagtattgacctctttgggct 453
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 231 accagatgagaagaagcagaaagtcttatatgtttagaacagtattgacctctttgggct 172
Query: 454 acaatgatagaaaaactcgttaggtatctaaatagcttttaaagcaattaaatttttgct 513
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 171 acaatgatagaaaaactcgttaggtatctaaatagcttttaaagcaattaaatttttgct 112
Query: 514 catttatttatttttatgtgtatgggtgttttgtctgcatgtatgtctgtgtac 567
||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 111 catttatttatttttatgtgtatgggtgttttgtctgcatgtatgtctgtgtac 58
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 44
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2
Number of HSP's successfully gapped: 1
Length of query: 567
Length of database: 967
Length adjustment: 10
Effective length of query: 557
Effective length of database: 957
Effective search space: 533049
Effective search space used: 533049
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no499_a17.g1 MSMg01no499_a17.g1 CHROMAT_FILE:
MSMg01no499_a17.g1 PHD_FILE: MSMg01no499_a17.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:25:20 2005
(632 letters)
>mm_chr19_43419390_43420421
Length = 1032
Score = 1141 bits (590), Expect = 0.0
Identities = 617/632 (97%), Gaps = 12/632 (1%)
Strand = Plus / Plus
Query: 1 aggagttctacccctaagcactcacccaaacaaacaaacaacaaaaaaaaaaccatgaat 60
|||||||||||||||||||||||||||||||||||||| |||||| |||||
Sbjct: 213 aggagttctacccctaagcactcacccaaacaaacaaa----aaaaaa-------tgaat 261
Query: 61 gttcataatgctttttcataacagccaaaatctggaaaaaagaaaaccaaaattctacca 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 262 gttcataatgctttttcataacagccaaaatctggaaaaaagaaaaccaaaattctacca 321
Query: 121 aatagaataggtaaaatgtaatatatatgttgagtgaaatagtacttaataatagaaatg 180
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 322 aatagaataggtaaaatgtaatatatatgttgagtaaaatagtacttaataatagaaatg 381
Query: 181 aacaaacttctaatacatgcaacaatgctgaggagtttccaatgggctacactacatgag 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 382 aacaaacttctaatacatgcaacaatgctgaggagtttccaatgggctacactacatgag 441
Query: 241 gggaagcccattctctcttaactgataatagatcagtagttcttagaaggagtgaagcag 300
|||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 442 gggaagcccaagc-ctcttaactgataatagatcagtagttcttagaaggagtgaagcag 500
Query: 301 agggttgactgtaaggggaaagaacaaactttttgaaaaacagaactgtatctcaaaaat 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 agggttgactgtaaggggaaagaacaaactttttgaaaaacagaactgtatctcaaaaat 560
Query: 361 gtaccaagataggagtataagctagcaatatttgtcagaactcgagtaagcatctgctta 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 gtaccaagataggagtataagctagcaatatttgtcagaactcgagtaagcatctgctta 620
Query: 421 ataattgcaatgttttatctaaataatgctgccaataaaaagcaggaatcttattaaaat 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 ataattgcaatgttttatctaaataatgctgccaataaaaagcaggaatcttattaaaat 680
Query: 481 tatttttatggctgtcatttgttccagccatacactctggtaatttctcatcttaaccta 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 tatttttatggctgtcatttgttccagccatacactctggtaatttctcatcttaaccta 740
Query: 541 attgagatgagtttaaatacacttgaaacagaaaaaaaaatagtgcaatgaattgaaaga 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 attgagatgagtttaaatacacttgaaacagaaaaaaaaatagtgcaatgaattgaaaga 800
Query: 601 gtgtggttactatctcctactcatttaaatgt 632
||||||||||||||||||||||||||||||||
Sbjct: 801 gtgtggttactatctcctactcatttaaatgt 832
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 632
Length of database: 1032
Length adjustment: 10
Effective length of query: 622
Effective length of database: 1022
Effective search space: 635684
Effective search space used: 635684
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
