BAC Information

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BAC

Clone NameMSMg01-501A03
Chromosome19 (Build37)
Map Location 11,840,041 - 11,987,921
singlet/doubletdoublet
Overlap geneEG666958, Mrpl16, Stx3, Olfr1417, Olfr1418, Olfr1419, EG622845, EG666985, Olfr1420, AV312086
Upstream geneCd6, Slc15a3, Tmem132a, Tmem109, Prpf19, Zp1, Gpr44, Ccdc86, Ms4a10, E530011F12Rik, 5033428B15Rik, AW112010, Ms4a8a, Gm336, LOC624395, 1700025F22Rik, Ms4a13, Ms4a12, Ms4a1, Ms4a5, Gm1276, Ms4a7, Ms4a4a, LOC435588, Ms4a4c, LOC433221, Ms4a4b, Ms4a6c, EG666926, Ms4a6b, Ms4a4d, LOC100040454, Ms4a6d, Ms4a2, Ms4a3, Plac1l, Oosp1, Gm97, Gif
Downstream geneOsbp, GA_x5J8B7W6KF8-6942124-6941700, Olfr1422-ps1, Olfr1423, Olfr1424, Olfr1425, Olfr1426, Olfr1427, Olfr1428, Olfr76, Olfr1555-ps1, Olfr1430-ps1, Olfr1431, Olfr1429-ps1, Olfr262, Olfr232, Olfr1433, Olfr1435-ps1, Olfr1436, Olfr1437, Olfr1438-ps1, Olfr1439-ps1, Olfr1440, Olfr1441, Pfpl, Mpeg1, Dtx4, EG625046, 4632417K18Rik, EG240549, Glyat, Olfr1442, Olfr1443, Keg1, Zfp91, Cntf, Lpxn, EG383436, Olfr1444, Olfr1445, Olfr1446, Olfr1447, EG433224
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-501A03.T7 (MSMg01no501_a03.b1)MSMg01-501A03.TJ (MSMg01no501_a03.g1)
ACCAG576709AG576710
length712684
length of high quality
(start - end)		656 (31 - 686)627 (58 - 684)
definitionCHROMAT_FILE: MSMg01no501_a03.b1 PHD_FILE: MSMg01no501_a03.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:27:45 2005CHROMAT_FILE: MSMg01no501_a03.g1 PHD_FILE: MSMg01no501_a03.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:27:45 2005
singlet/doubletdoubletdoublet
BLAST hituniqueplural
Map location.(11,987,269 - 11,987,921)(11,840,041 - 11,840,667)
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCCACACTCTAT
GGGAACAGCTTGTGATATAACTTACCTGGGAACTTTTAGGGGCCGTTTCT
ACCCAATCTTCCTCCCCCTAAAGAGCCAGCCCTGCAACTGCCTCCACACC
AGAAGCAACTTCTAGTAACTCTCTATGAAATGGCAATCATCTACTGGACC
AAATCAGGATGACTCGGTAAGGATTTCCCTAGCTCAGTCCTTAAACTACA
AATCCGGAGTCTGTTTGGCCCCAAGAGTAGGAGTTGCTCAAGGTCACACA
GCAGTAAGAGACGGTCAGCAAACAGCTCCGTTCTCCAAACAACGTCGCCA
AACCCACACTTTTTCTCCCTTCTCCTAGAAGGAACTTCTGCGGGACACGC
CCCCCTCCCCACTCCCAGCCTTCTTTCCAAGCCGACTGAAGTCTCAGCCC
GAGGACCAGTCCCTGCCCCTCCACCTGACGGCAGCCCGCGTGCACAGGGC
TGTGTGTAATCCGGGTGAAGGGGTTCCGGGGGCAGGGCGGGAAACGCTTC
CGTGGGCATTCCCCGGGGATTCTGCCTCAGGAAAAACCACCGGGTAGGAG
CCATGCAGGTCTCCAAGGCAGCTCCGCGAGCAGAGGCTCAAGCCAAGGGT
CAGGTTACCGCACTTAACGGGCTCTCCCCGCCGCAAACCAGCGGCCGGCT
CTCGCCAGTCCC

XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXTATGAGCGCCTGCCTGAGCTGAGGCAGGTTGTGGATCATCAGA
TCAACAGTGGCTTCTTTTCTCCCAAAGATCCAGACTGCTTCAAGGACGTG
GTTAACATGCTGATGTACCATTCAAGGTACTTGCAGACTATGAAGCCTAC
ATCCAATACCAGGCCCAGGTGGACCATCTATACCGCAATTCCAAGTAGTG
GACAAAAAAGGTGATCAGGAATATAGGCTGCTCTGGCAAGTTCTCCAGTG
ACCGAACCATCACTGAATACACCCAGGAGATCTGGGGTATAGAGCCCTCT
GACCTGCCTATCCCACCCCCCAACCTCCCCAAGGACTAATTAATTATCCC
ACACAGTGAGACCAGTGGCTTGTTTAGCTGACTGTACCCTTGCCAGTCTT
CAGGCACTGCAAGCAACTGCTGGTCCCTGCTATCCAAAGTGCTATGTGTC
CAGGGAGGATCATGGGAATGGTTTTGAGGACCTAGATAAGAAAGGAGACG
TGACATCCTCCTTGTTTCTTACAGAAGAACTCTTGCAGAGTTCACAGCAC
AGAGAGGCAGAGATGGTCCCCACAGCTTCAGCCCATCATCATCCCCAGAG
GCTGAGCAGGGAGGGAGTGGAGCTGAGCCCCTGA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no501_a03.b1 MSMg01no501_a03.b1 CHROMAT_FILE:
MSMg01no501_a03.b1 PHD_FILE: MSMg01no501_a03.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:27:45 2005
         (656 letters)



>mm_chr19_11987066_11988121
          Length = 1056

 Score = 1239 bits (641), Expect = 0.0
 Identities = 650/653 (99%)
 Strand = Plus / Minus

                                                                       
Query: 4   ggaattccacactctatgggaacagcttgtgatataacttacctgggaacttttaggggc 63
           |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 856 ggaattccacactctaggggaacagcttgtgatataacttacctgggaacttttaggggc 797

                                                                       
Query: 64  cgtttctacccaatcttcctccccctaaagagccagccctgcaactgcctccacaccaga 123
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 796 cgtttctacccaatcttcctccccctaaagagccagccctgcaactgcctccacaccaga 737

                                                                       
Query: 124 agcaacttctagtaactctctatgaaatggcaatcatctactggaccaaatcaggatgac 183
           |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 736 agcaacttctagcaactctctatgaaatggcaatcatctactggaccaaatcaggatgac 677

                                                                       
Query: 184 tcggtaaggatttccctagctcagtccttaaactacaaatccggagtctgtttggcccca 243
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 676 tcggtaaggatttccctagctcagtccttaaactacaaatccggagtctgtttggcccca 617

                                                                       
Query: 244 agagtaggagttgctcaaggtcacacagcagtaagagacggtcagcaaacagctccgttc 303
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 616 agagtaggagttgctcaaggtcacacagcagtaagagacggtcagcaaacagctccgttc 557

                                                                       
Query: 304 tccaaacaacgtcgccaaacccacactttttctcccttctcctagaaggaacttctgcgg 363
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 556 tccaaacaacgtcgccaaacccacactttttctcccttctcctagaaggaacttctgcgg 497

                                                                       
Query: 364 gacacgcccccctccccactcccagccttctttccaagccgactgaagtctcagcccgag 423
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 496 gacacgcccccctccccactcccagccttctttccaagccgactgaagtctcagcccgag 437

                                                                       
Query: 424 gaccagtccctgcccctccacctgacggcagcccgcgtgcacagggctgtgtgtaatccg 483
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 436 gaccagtccctgcccctccacctgacggcagcccgcgtgcacagggctgtgtgtaatccg 377

                                                                       
Query: 484 ggtgaaggggttccgggggcagggcgggaaacgcttccgtgggcattccccggggattct 543
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 376 ggtgaaggggttccgggggcagggcgggaaacgcttccgtgggcattccccggggattct 317

                                                                       
Query: 544 gcctcaggaaaaaccaccgggtaggagccatgcaggtctccaaggcagctccgcgagcag 603
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 316 gcctcaggaaaaaccaccgggtaggagccatgcaggtctccaaggcagctccgcgagcag 257

                                                                
Query: 604 aggctcaagccaagggtcaggttaccgcacttaacgggctctccccgccgcaa 656
           |||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 256 aggcgcaagccaagggtcaggttaccgcacttaacgggctctccccgccgcaa 204


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 32
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 656
Length of database: 1056
Length adjustment: 10
Effective length of query: 646
Effective length of database: 1046
Effective search space:   675716
Effective search space used:   675716
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no501_a03.g1 MSMg01no501_a03.g1 CHROMAT_FILE:
MSMg01no501_a03.g1 PHD_FILE: MSMg01no501_a03.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:27:45 2005
         (627 letters)



>mm_chr19_11839841_11840867
          Length = 1027

 Score = 1112 bits (575), Expect = 0.0
 Identities = 614/627 (97%)
 Strand = Plus / Plus

                                                                       
Query: 1   tatgagcgcctgcctgagctgaggcaggttgtggatcatcagatcaacagtggcttcttt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tatgagcgcctgcctgagctgaggcaggttgtggatcatcagatcaacagtggcttcttt 260

                                                                       
Query: 61  tctcccaaagatccagactgcttcaaggacgtggttaacatgctgatgtaccattcaagg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tctcccaaagatccagactgcttcaaggacgtggttaacatgctgatgtaccattcaagg 320

                                                                       
Query: 121 tacttgcagactatgaagcctacatccaataccaggcccaggtggaccatctataccgca 180
           |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 321 tacttgcagactatgaagcctacatccaatgccaggcccaggtggaccatctataccgca 380

                                                                       
Query: 181 attccaagtagtggacaaaaaaggtgatcaggaatataggctgctctggcaagttctcca 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 attccaagtagtggacaaaaaaggtgatcaggaatataggctgctctggcaagttctcca 440

                                                                       
Query: 241 gtgaccgaaccatcactgaatacacccaggagatctggggtatagagccctctgacctgc 300
           ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 441 gtgaccgaaccatcactgaatacacccgggagatctggggtatagagccctctgacctgc 500

                                                                       
Query: 301 ctatcccaccccccaacctccccaaggactaattaattatcccacacagtgagaccagtg 360
           ||| ||||| ||||||||||||||||||||||||||||| | ||||||||||||| ||||
Sbjct: 501 ctaccccactccccaacctccccaaggactaattaattaactcacacagtgagactagtg 560

                                                                       
Query: 361 gcttgtttagctgactgtacccttgccagtcttcaggcactgcaagcaactgctggtccc 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 gcttgtttagctgactgtacccttgccagtcttcaggcactgcaagcaactgctggtccc 620

                                                                       
Query: 421 tgctatccaaagtgctatgtgtccagggaggatcatgggaatggttttgaggacctagat 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| 
Sbjct: 621 tgctatccaaagtgctatgtgtccagggaggatcatgggaatggttttgaggacctagac 680

                                                                       
Query: 481 aagaaaggagacgtgacatcctccttgtttcttacagaagaactcttgcagagttcacag 540
           ||| ||||||| ||| |||||||||||||||||||||||||| | |||||||||||||||
Sbjct: 681 aaggaaggagatgtggcatcctccttgtttcttacagaagaattgttgcagagttcacag 740

                                                                       
Query: 541 cacagagaggcagagatggtccccacagcttcagcccatcatcatccccagaggctgagc 600
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 cacagagaggcagagatggtccccacagcttcagcccatcatcatccccagaggctgagc 800

                                      
Query: 601 agggagggagtggagctgagcccctga 627
           |||||||||||||||||||||||||||
Sbjct: 801 agggagggagtggagctgagcccctga 827


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 627
Length of database: 1027
Length adjustment: 10
Effective length of query: 617
Effective length of database: 1017
Effective search space:   627489
Effective search space used:   627489
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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